Os03g0141200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).
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Os03g0141200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.91 | 0.501 | 13.2 | 1.76 | 2.53 | 1.65 | -0.121 | -2.62 | 0.397 | 7.09 | 29.7 | 90 | 9.98 | -- |
| 123.65 | 0.518 | 13.2 | 1.65 | 2.5 | 1.66 | 1.07 | -- | 0.389 | 7.06 | 29.39 | 114 | 10.6 | -- |
| 113.92 | 0.497 | 13.2 | 1.74 | 2.52 | 1.66 | -- | -2.56 | 0.393 | 7.1 | 29.61 | 90 | 9.9 | -- |
| 126.09 | 0.523 | 13.2 | 1.49 | 2.44 | 1.68 | -- | -- | 0.346 | 6.92 | 28.33 | 107 | 10.5 | -- |
| 167.73 | 0.603 | 13.2 | 1.16 | -- | 2.78 | -- | 1.56 | 0.374 | -- | 35.34 | 384 | 3.07 | -- |
| 152.73 | 0.579 | 13.2 | 1.22 | 2.18 | -- | 1.06 | -- | 0.13 | 6.15 | -- | -- | -- | -- |
| 155.29 | 0.584 | 13.2 | 1.23 | 2.19 | -- | -- | -- | 0.126 | 6.04 | -- | -- | -- | -- |
| 151.45 | 0.573 | 13.3 | 1.32 | -- | 2.49 | -- | -- | 0.213 | -- | 72.18 | 469 | 3.94 | -- |
| 179.67 | 0.628 | 13.3 | -- | 2.29 | 1.24 | -- | -- | 0.0962 | 6.36 | 23.31 | 82 | 10.2 | -- |
| 403.02 | 0.938 | 13.3 | 1.29 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 195 | 0.653 | 13.3 | -- | 2.2 | -- | -- | -- | -0.0111 | 6.02 | -- | -- | -- | -- |
| 195.02 | 0.65 | 13.3 | -- | -- | 2.25 | -- | -- | 0.0043 | -- | 343 | 479 | 3.98 | -- |
| 446.96 | 0.987 | 13.3 | -- | -- | -- | -- | -- | 0.0318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 36 | 113.96 | temperature | 30.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 41 | 114.53 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 118 | 117.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 196 | 119.51 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 10 |
| 202 | 119.67 | temperature | 20.0 | 10 | < th | dose independent | sin | 14 | NA |
| 203 | 119.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 212 | 119.86 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 231 | 120.11 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 10 |
| 278 | 120.83 | temperature | 20.0 | 90 | < th | dose independent | sin | 15 | NA |
| 326 | 121.63 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 16 |
| 327 | 121.65 | temperature | 20.0 | 270 | > th | dose independent | sin | 19 | NA |
| 337 | 121.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 359 | 122.04 | temperature | 10.0 | 90 | > th | dose dependent | sin | 18 | NA |
| 455 | 122.87 | temperature | 10.0 | 90 | > th | dose dependent | sin | 16 | NA |
| 460 | 122.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 487 | 123.28 | temperature | 10.0 | 10 | > th | dose dependent | sin | 17 | NA |
| 518 | 123.62 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 549 | 123.83 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 566 | 123.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 573 | 124.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 598 | 124.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 606 | 124.31 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 617 | 124.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 619 | 124.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 620 | 124.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 670 | 124.83 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 16 | 9 |
| 675 | 124.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 682 | 124.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 690 | 124.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 694 | 125.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 15 |
| 696 | 125.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 697 | 125.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 710 | 125.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 9 |
| 711 | 125.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 715 | 125.15 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 17 | 8 |
| 723 | 125.22 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 748 | 125.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 823 | 125.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 878 | 126.13 | radiation | 1.0 | 90 | > th | dose independent | sin | 4 | NA |
| 894 | 126.23 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 9 |
| 904 | 126.27 | temperature | 20.0 | 10 | > th | dose independent | sin | 18 | NA |
| 908 | 126.28 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 16 | 9 |
| 911 | 126.29 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 982 | 126.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 22 |