Os03g0140100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os03g0140100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.08 | 0.355 | 11.6 | -0.359 | 1.15 | -2.86 | -0.91 | 1.55 | 0.517 | 5.1 | 0.46 | 714 | -- | -- |
| 57.23 | 0.352 | 11.6 | -0.325 | 1.4 | -3.13 | 0.409 | -- | 0.529 | 5.13 | 0.3828 | 705 | -- | -- |
| 57.35 | 0.353 | 11.6 | -0.309 | 1.14 | -2.85 | -- | 0.539 | 0.527 | 5.19 | 0.3758 | 714 | -- | -- |
| 57.42 | 0.353 | 11.6 | -0.326 | 1.47 | -3.19 | -- | -- | 0.523 | 5.11 | 0.4369 | 701 | -- | -- |
| 62.34 | 0.368 | 11.6 | -0.214 | -- | -1.65 | -- | 0.628 | 0.595 | -- | 0.3101 | 780 | -- | -- |
| 76.99 | 0.411 | 11.6 | -0.0322 | 1.16 | -- | -0.134 | -- | 0.655 | 18.1 | -- | -- | -- | -- |
| 77.04 | 0.411 | 11.6 | -0.0309 | 1.16 | -- | -- | -- | 0.655 | 18.1 | -- | -- | -- | -- |
| 63.26 | 0.37 | 11.6 | -0.193 | -- | -1.65 | -- | -- | 0.596 | -- | 0.36 | 777 | -- | -- |
| 60.05 | 0.361 | 11.6 | -- | 1.41 | -3.07 | -- | -- | 0.548 | 4.99 | 0.5383 | 694 | -- | -- |
| 147.23 | 0.567 | 11.6 | -0.0641 | -- | -- | -- | -- | 0.628 | -- | -- | -- | -- | -- |
| 77.06 | 0.411 | 11.6 | -- | 1.16 | -- | -- | -- | 0.658 | 18.1 | -- | -- | -- | -- |
| 64.22 | 0.373 | 11.6 | -- | -- | -1.63 | -- | -- | 0.615 | -- | 0.42 | 773 | -- | -- |
| 147.34 | 0.567 | 11.6 | -- | -- | -- | -- | -- | 0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 2 | 56.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 3 | 56.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 8 | 56.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 12 |
| 9 | 56.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 18 | 57.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 31 | 57.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 35 | 57.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 41 | 57.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 44 | 57.71 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 13 |
| 46 | 57.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 62 | 57.84 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 79 | 58.01 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 81 | 58.02 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 86 | 58.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 108 | 58.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 144 | 58.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 156 | 58.67 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 164 | 58.71 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 20 |
| 172 | 58.75 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 8 |
| 235 | 59.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 238 | 59.10 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 258 | 59.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 273 | 59.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 280 | 59.33 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 310 | 59.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 321 | 59.47 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 326 | 59.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 327 | 59.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 332 | 59.50 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 18 |
| 336 | 59.51 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 338 | 59.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 345 | 59.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 347 | 59.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 373 | 59.59 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 407 | 59.65 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 411 | 59.66 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 14 |
| 416 | 59.67 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 19 |
| 456 | 59.74 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 22 |
| 484 | 59.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 486 | 59.79 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 496 | 59.79 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 21 |
| 511 | 59.83 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 519 | 59.84 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 521 | 59.85 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 543 | 59.89 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 574 | 59.95 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 580 | 59.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 590 | 59.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 651 | 60.06 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 665 | 60.07 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 696 | 60.11 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 698 | 60.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 709 | 60.13 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 719 | 60.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 760 | 60.20 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 825 | 60.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 869 | 60.33 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 875 | 60.33 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 876 | 60.33 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 883 | 60.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 918 | 60.37 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 922 | 60.37 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 945 | 60.40 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 949 | 60.40 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 22 |
| 958 | 60.41 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 983 | 60.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |