Os03g0139300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0139300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.4 | 0.419 | 9.52 | 0.142 | 1.72 | -1.99 | -0.0443 | 0.485 | -0.3 | 10.9 | 21.3 | 1851 | -- | -- |
| 80.15 | 0.417 | 9.53 | 0.0664 | 1.73 | -2.01 | -0.00208 | -- | -0.297 | 10.9 | 21.3 | 1851 | -- | -- |
| 79.41 | 0.415 | 9.52 | 0.141 | 1.72 | -1.99 | -- | 0.489 | -0.3 | 10.9 | 21.3 | 1853 | -- | -- |
| 80.02 | 0.417 | 9.52 | 0.024 | 1.72 | -2.04 | -- | -- | -0.299 | 10.9 | 21.3 | 1851 | -- | -- |
| 217.89 | 0.687 | 9.55 | -0.0541 | -- | -2.05 | -- | 0.437 | -0.25 | -- | 21.8 | 862 | -- | -- |
| 194.71 | 0.654 | 9.66 | -0.894 | 1.77 | -- | -0.104 | -- | -0.907 | 10.9 | -- | -- | -- | -- |
| 194.76 | 0.654 | 9.66 | -0.899 | 1.77 | -- | -- | -- | -0.907 | 10.9 | -- | -- | -- | -- |
| 218.48 | 0.688 | 9.56 | -0.227 | -- | -2.03 | -- | -- | -0.278 | -- | 21.93 | 865 | -- | -- |
| 79.94 | 0.416 | 9.53 | -- | 1.72 | -2.02 | -- | -- | -0.33 | 11 | 21.37 | 1851 | -- | -- |
| 390.18 | 0.923 | 9.71 | -0.936 | -- | -- | -- | -- | -0.919 | -- | -- | -- | -- | -- |
| 216.04 | 0.688 | 9.64 | -- | 1.78 | -- | -- | -- | -0.807 | 10.9 | -- | -- | -- | -- |
| 219.3 | 0.69 | 9.56 | -- | -- | -2.1 | -- | -- | -0.246 | -- | 21.8 | 880 | -- | -- |
| 413.3 | 0.949 | 9.68 | -- | -- | -- | -- | -- | -0.815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 13 | 80.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 20 | 81.13 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 41 | 81.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 107 | 83.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 113 | 83.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 114 | 83.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 117 | 83.15 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 119 | 83.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 130 | 83.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 146 | 83.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 11 |
| 163 | 83.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 175 | 83.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 443 | 85.59 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 489 | 85.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 569 | 86.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 577 | 86.65 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 630 | 87.08 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 651 | 87.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 656 | 87.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 669 | 87.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 675 | 87.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 676 | 87.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 686 | 87.56 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 695 | 87.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 705 | 87.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 763 | 88.11 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 772 | 88.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 774 | 88.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 827 | 88.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 833 | 88.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 858 | 88.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 902 | 88.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |