Os03g0139100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 60S ribosomal protein L17 [Oryza sativa (japonica cultivar-group)].
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Os03g0139100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 60S ribosomal protein L17 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.01 | 0.463 | 15.5 | 0.806 | 1.2 | 0.638 | 0.692 | -1.42 | 0.179 | 19 | 20.59 | 2801 | -- | -- |
| 99.34 | 0.464 | 15.4 | 1.05 | 1.19 | 0.975 | 0.73 | -- | 0.231 | 19 | 19.63 | 2648 | -- | -- |
| 98.24 | 0.462 | 15.5 | 0.789 | 1.21 | 0.652 | -- | -1.42 | 0.18 | 19 | 20.6 | 2745 | -- | -- |
| 100.69 | 0.467 | 15.4 | 1.04 | 1.2 | 0.98 | -- | -- | 0.256 | 18.9 | 19.4 | 2604 | -- | -- |
| 172.57 | 0.612 | 15.5 | 0.836 | -- | 0.843 | -- | -0.996 | 0.154 | -- | 20.27 | 2216 | -- | -- |
| 115.97 | 0.505 | 15.4 | 1.54 | 1.18 | -- | 0.851 | -- | 0.471 | 19.2 | -- | -- | -- | -- |
| 117.88 | 0.508 | 15.4 | 1.53 | 1.19 | -- | -- | -- | 0.473 | 19.1 | -- | -- | -- | -- |
| 169.68 | 0.607 | 15.4 | 1.19 | -- | 0.859 | -- | -- | 0.263 | -- | 20.51 | 705 | -- | -- |
| 109.14 | 0.487 | 15.4 | -- | 1.14 | 1.28 | -- | -- | 0.101 | 19.1 | 18.33 | 21532 | -- | -- |
| 192.12 | 0.648 | 15.4 | 1.5 | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
| 179.35 | 0.626 | 15.4 | -- | 1.17 | -- | -- | -- | 0.303 | 19.2 | -- | -- | -- | -- |
| 181.2 | 0.627 | 15.5 | -- | -- | 1.43 | -- | -- | 0.0283 | -- | 15.83 | 47520 | -- | -- |
| 251.82 | 0.741 | 15.4 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 25 | 94.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 48 | 95.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 50 | 95.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 63 | 95.77 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 78 | 96.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 84 | 96.18 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 87 | 96.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 103 | 96.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 126 | 96.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 130 | 96.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 142 | 96.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 147 | 96.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 153 | 96.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 203 | 97.08 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 229 | 97.20 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 269 | 97.38 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 272 | 97.39 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 274 | 97.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 282 | 97.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 300 | 97.51 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 303 | 97.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 386 | 97.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 403 | 97.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 404 | 97.83 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 407 | 97.84 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 426 | 97.87 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 427 | 97.88 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 5 |
| 429 | 97.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 450 | 97.93 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 494 | 98.04 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 496 | 98.04 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 513 | 98.08 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 545 | 98.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 553 | 98.15 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 568 | 98.17 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 575 | 98.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 581 | 98.20 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 588 | 98.20 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 683 | 98.35 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 859 | 98.65 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 868 | 98.67 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 904 | 98.74 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |