Os03g0138700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os03g0138700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.41 | 0.658 | 9.68 | -0.487 | 2.64 | 2.43 | 0.568 | 3.36 | -0.359 | 21.8 | 0.6353 | 1394 | -- | -- |
| 202.19 | 0.662 | 9.67 | -0.155 | 2.5 | 1.62 | 0.305 | -- | -0.366 | 21.7 | 0.685 | 1392 | -- | -- |
| 196.24 | 0.652 | 9.69 | -0.545 | 2.6 | 2.52 | -- | 3.98 | -0.399 | 21.8 | 0.3965 | 1409 | -- | -- |
| 201.68 | 0.661 | 9.66 | -0.214 | 2.58 | 1.64 | -- | -- | -0.357 | 21.8 | 0.7196 | 1388 | -- | -- |
| 351.05 | 0.877 | 9.6 | -0.514 | -- | 1.41 | -- | -0.457 | -0.504 | -- | 0.8895 | 1570 | -- | -- |
| 231 | 0.713 | 9.67 | -0.592 | 2.39 | -- | 0.0305 | -- | -0.514 | 21.6 | -- | -- | -- | -- |
| 231 | 0.712 | 9.67 | -0.593 | 2.39 | -- | -- | -- | -0.514 | 21.6 | -- | -- | -- | -- |
| 341.88 | 0.865 | 9.6 | -0.545 | -- | 1.45 | -- | -- | -0.488 | -- | 2.04 | 5995 | -- | -- |
| 202.66 | 0.663 | 9.66 | -- | 2.59 | 1.73 | -- | -- | -0.325 | 21.8 | 0.7198 | 1388 | -- | -- |
| 568.38 | 1.11 | 9.6 | -0.573 | -- | -- | -- | -- | -0.519 | -- | -- | -- | -- | -- |
| 240.27 | 0.725 | 9.65 | -- | 2.38 | -- | -- | -- | -0.448 | 21.6 | -- | -- | -- | -- |
| 349.41 | 0.873 | 9.58 | -- | -- | 1.45 | -- | -- | -0.426 | -- | 2.098 | 5990 | -- | -- |
| 577.04 | 1.12 | 9.59 | -- | -- | -- | -- | -- | -0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.20 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 2 | 184.22 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 5 | 184.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 19 | 185.69 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 43 | 186.90 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 73 | 188.27 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 88 | 188.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 91 | 188.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 92 | 189.01 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 94 | 189.10 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 18 |
| 95 | 189.14 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 124 | 189.58 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 130 | 189.66 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 138 | 189.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 158 | 190.00 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 18 |
| 171 | 190.27 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 175 | 190.30 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 176 | 190.32 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 177 | 190.34 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 181 | 190.35 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 184 | 190.36 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 195 | 190.42 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 10 |
| 201 | 190.50 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 237 | 190.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 239 | 190.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 241 | 190.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 247 | 190.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 271 | 190.76 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 300 | 190.86 | radiation | 10 | 43200 | < th | dose independent | sin | 10 | NA |
| 315 | 190.92 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 355 | 191.04 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 370 | 191.06 | radiation | 40 | 43200 | < th | dose independent | sin | 10 | NA |
| 374 | 191.10 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 378 | 191.12 | radiation | 20 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 380 | 191.13 | radiation | 20 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 392 | 191.20 | radiation | 20 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 400 | 191.23 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 450 | 191.40 | radiation | 20 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 455 | 191.41 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 468 | 191.44 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 481 | 191.46 | radiation | 40 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 498 | 191.47 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 528 | 191.56 | wind | 7 | 43200 | < th | dose independent | sin | 21 | NA |
| 566 | 191.68 | radiation | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 582 | 191.75 | wind | 7 | 43200 | > th | dose independent | sin | 21 | NA |
| 629 | 191.88 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 656 | 191.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 658 | 191.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 663 | 191.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 666 | 191.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 667 | 191.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 15 |
| 671 | 191.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 672 | 191.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 696 | 191.94 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 822 | 192.00 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 831 | 192.02 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 934 | 192.23 | radiation | 30 | 43200 | > th | dose dependent | sin | 11 | NA |
| 1000 | 192.28 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 13 |