Os03g0138400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0138400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.02 | 0.205 | 11.1 | 0.317 | 0.0659 | -0.861 | 0.759 | -0.823 | 0.123 | 20.5 | 15.64 | 610 | -- | -- |
| 19.4 | 0.205 | 11 | 0.449 | 0.0591 | -0.83 | 0.575 | -- | 0.163 | 20.7 | 16.67 | 587 | -- | -- |
| 20.5 | 0.211 | 11 | 0.383 | 0.102 | -0.895 | -- | -0.279 | 0.147 | 16.5 | 15.12 | 457 | -- | -- |
| 20.47 | 0.211 | 11 | 0.425 | 0.0745 | -0.844 | -- | -- | 0.158 | 18.2 | 16.41 | 526 | -- | -- |
| 20.69 | 0.212 | 11 | 0.377 | -- | -0.825 | -- | -0.242 | 0.138 | -- | 14.91 | 588 | -- | -- |
| 29.62 | 0.255 | 11.1 | 0.239 | 0.168 | -- | -0.457 | -- | 0.0243 | 7.98 | -- | -- | -- | -- |
| 30.19 | 0.257 | 11.1 | 0.226 | 0.174 | -- | -- | -- | 0.024 | 7.35 | -- | -- | -- | -- |
| 20.67 | 0.212 | 11 | 0.422 | -- | -0.783 | -- | -- | 0.151 | -- | 16.35 | 586 | -- | -- |
| 24.85 | 0.232 | 11.1 | -- | 0.0349 | -0.658 | -- | -- | 0.0951 | 17.4 | 17.36 | 473 | -- | -- |
| 31.8 | 0.263 | 11.1 | 0.229 | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
| 31.53 | 0.263 | 11.1 | -- | 0.176 | -- | -- | -- | -0.00116 | 7.26 | -- | -- | -- | -- |
| 24.77 | 0.232 | 11.1 | -- | -- | -0.575 | -- | -- | 0.0847 | -- | 19.3 | 522 | -- | -- |
| 33.17 | 0.269 | 11.1 | -- | -- | -- | -- | -- | 0.00149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 2 | 18.14 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 18 | 18.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 36 | 18.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 74 | 18.73 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 113 | 18.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 176 | 19.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 190 | 19.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 208 | 19.21 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 218 | 19.24 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 235 | 19.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 269 | 19.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 283 | 19.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 293 | 19.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 300 | 19.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 369 | 19.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 405 | 19.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 410 | 19.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 416 | 19.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 422 | 19.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 424 | 19.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 550 | 19.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 613 | 19.98 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 630 | 19.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 925 | 20.18 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |