Os03g0138000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0138000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.58 | 0.272 | 9.41 | 0.345 | 0.493 | -0.683 | -0.511 | 0.234 | 0.0301 | 3.93 | 4.699 | 106 | -- | -- |
| 33.66 | 0.27 | 9.41 | 0.35 | 0.5 | -0.673 | -0.613 | -- | 0.032 | 3.82 | 5.66 | 106 | -- | -- |
| 34.13 | 0.272 | 9.41 | 0.354 | 0.478 | -0.691 | -- | 0.598 | 0.0299 | 4 | 3.01 | 125 | -- | -- |
| 34.73 | 0.274 | 9.41 | 0.357 | 0.479 | -0.717 | -- | -- | 0.0349 | 4.08 | 4.86 | 106 | -- | -- |
| 39.29 | 0.292 | 9.41 | 0.385 | -- | -0.994 | -- | 0.568 | 0.068 | -- | -23.4 | 204 | -- | -- |
| 40.43 | 0.298 | 9.43 | 0.337 | 0.787 | -- | -0.636 | -- | -0.00565 | 2.7 | -- | -- | -- | -- |
| 41.84 | 0.303 | 9.42 | 0.352 | 0.785 | -- | -- | -- | -0.00188 | 2.7 | -- | -- | -- | -- |
| 39.85 | 0.294 | 9.41 | 0.384 | -- | -1 | -- | -- | 0.0601 | -- | -24.46 | 181 | -- | -- |
| 38.11 | 0.288 | 9.42 | -- | 0.5 | -0.694 | -- | -- | -0.00717 | 3.9 | 5.416 | 106 | -- | -- |
| 77.77 | 0.412 | 9.42 | 0.386 | -- | -- | -- | -- | 0.018 | -- | -- | -- | -- | -- |
| 45.11 | 0.314 | 9.43 | -- | 0.792 | -- | -- | -- | -0.0411 | 2.71 | -- | -- | -- | -- |
| 43.73 | 0.308 | 9.42 | -- | -- | -1 | -- | -- | 0.017 | -- | -0.07118 | 178 | -- | -- |
| 81.7 | 0.422 | 9.43 | -- | -- | -- | -- | -- | -0.0248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.53 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 8 | 30.94 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 10 | 30.97 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 7 |
| 27 | 31.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 29 | 31.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 46 | 31.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 54 | 31.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 60 | 31.57 | radiation | 10.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 63 | 31.63 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 65 | 31.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 70 | 31.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 71 | 31.71 | radiation | 10.0 | 270 | > th | dose independent | sin | 4 | NA |
| 74 | 31.73 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 115 | 31.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 116 | 31.76 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 119 | 31.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 120 | 31.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 123 | 31.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 125 | 31.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 126 | 31.83 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 128 | 31.86 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 133 | 31.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 134 | 31.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 138 | 31.91 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 172 | 31.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 174 | 31.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 175 | 31.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 177 | 31.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 178 | 31.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 179 | 31.95 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 181 | 31.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 189 | 31.98 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 191 | 31.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 206 | 32.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 211 | 32.00 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 232 | 32.05 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 235 | 32.07 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 238 | 32.09 | humidity | 80.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 246 | 32.12 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 249 | 32.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 250 | 32.13 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 277 | 32.18 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 281 | 32.19 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 284 | 32.19 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 293 | 32.21 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 295 | 32.22 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 298 | 32.22 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 302 | 32.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 303 | 32.23 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 304 | 32.23 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 310 | 32.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 334 | 32.27 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 359 | 32.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 362 | 32.32 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 365 | 32.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 6 |
| 366 | 32.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 367 | 32.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 369 | 32.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 375 | 32.35 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 378 | 32.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 391 | 32.38 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 396 | 32.38 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 409 | 32.41 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 416 | 32.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 426 | 32.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 430 | 32.45 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 433 | 32.45 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 441 | 32.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 443 | 32.47 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 444 | 32.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 447 | 32.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 448 | 32.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 449 | 32.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 452 | 32.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 454 | 32.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 458 | 32.48 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 461 | 32.48 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 495 | 32.51 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 499 | 32.52 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 8 | 4 |
| 503 | 32.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 529 | 32.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 530 | 32.55 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 576 | 32.59 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 614 | 32.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 623 | 32.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 624 | 32.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 625 | 32.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 627 | 32.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 628 | 32.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 633 | 32.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 634 | 32.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 635 | 32.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 637 | 32.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 647 | 32.65 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 654 | 32.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 662 | 32.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 672 | 32.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 682 | 32.68 | radiation | 10.0 | 90 | > th | dose independent | sin | 0 | NA |
| 699 | 32.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 704 | 32.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 720 | 32.71 | radiation | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 754 | 32.74 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 15 |
| 769 | 32.75 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 771 | 32.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 779 | 32.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 797 | 32.77 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 848 | 32.81 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 854 | 32.82 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 855 | 32.82 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 865 | 32.83 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 874 | 32.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 922 | 32.87 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 942 | 32.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 968 | 32.90 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |