Os03g0137600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0137600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.8 | 0.514 | 14.5 | -1.74 | 0.628 | 1.91 | -0.861 | 0.595 | -1.68 | 22.1 | 79.88 | 1438 | 7.18 | 7.86 |
| 120.35 | 0.511 | 14.5 | -1.82 | 0.658 | 1.97 | -0.841 | -- | -1.7 | 22.2 | 79.77 | 1443 | 7.19 | 7.77 |
| 122.52 | 0.516 | 14.5 | -1.68 | 0.636 | 1.89 | -- | 0.633 | -1.68 | 22.4 | 79.82 | 1442 | 7.3 | 7.68 |
| 123.13 | 0.517 | 14.5 | -1.76 | 0.667 | 1.94 | -- | -- | -1.69 | 22.4 | 79.6 | 1447 | 7.26 | 7.63 |
| 133.21 | 0.538 | 14.6 | -1.67 | -- | 2.09 | -- | 0.405 | -1.83 | -- | 80.83 | 1332 | 7.62 | 7.98 |
| 215.75 | 0.689 | 14.5 | -1.41 | 0.659 | -- | -0.577 | -- | -1.4 | 22.3 | -- | -- | -- | -- |
| 217.04 | 0.69 | 14.5 | -1.39 | 0.66 | -- | -- | -- | -1.4 | 22.5 | -- | -- | -- | -- |
| 133.21 | 0.538 | 14.6 | -1.72 | -- | 2.06 | -- | -- | -1.83 | -- | 80.8 | 1328 | 7.65 | 7.96 |
| 188.4 | 0.639 | 14.5 | -- | 0.602 | 1.91 | -- | -- | -1.59 | 22.1 | 82.08 | 1435 | 7.92 | 7.58 |
| 243.79 | 0.73 | 14.5 | -1.38 | -- | -- | -- | -- | -1.4 | -- | -- | -- | -- | -- |
| 267.98 | 0.766 | 14.4 | -- | 0.652 | -- | -- | -- | -1.24 | 22.4 | -- | -- | -- | -- |
| 197.05 | 0.654 | 14.5 | -- | -- | 2.07 | -- | -- | -1.6 | -- | 83.17 | 1313 | 7.42 | 8.23 |
| 293.94 | 0.8 | 14.4 | -- | -- | -- | -- | -- | -1.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 3 | 120.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 21 | 123.97 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 28 | 124.44 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 84 | 128.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 90 | 128.91 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 137 | 131.91 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 187 | 134.10 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 288 | 136.28 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 325 | 136.70 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 380 | 137.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 420 | 137.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 442 | 137.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 810 | 140.32 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 859 | 140.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 882 | 140.79 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 953 | 141.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 957 | 141.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 961 | 141.15 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |