Os03g0137200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os03g0137200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.66 | 0.366 | 11.2 | 0.206 | 1.69 | -0.838 | -0.34 | -3.34 | 0.147 | 1.12 | 14.11 | 5789 | -- | -- |
| 66.35 | 0.382 | 11.1 | 0.793 | 1.35 | -0.866 | -0.551 | -- | 0.333 | 0.704 | 23.23 | 2469 | -- | -- |
| 61.03 | 0.364 | 11.2 | 0.184 | 1.71 | -0.82 | -- | -3.39 | 0.133 | 1.08 | 14.37 | 5423 | -- | -- |
| 62.73 | 0.369 | 11.1 | 0.863 | 1.69 | -0.599 | -- | -- | 0.22 | 1.14 | 27.6 | 5752 | -- | -- |
| 160.43 | 0.593 | 11 | 0.908 | -- | -2.41 | -- | -1.84 | 0.5 | -- | 14.22 | 6039 | -- | -- |
| 78.31 | 0.415 | 11.1 | 0.64 | 1.66 | -- | -0.397 | -- | 0.21 | 1.09 | -- | -- | -- | -- |
| 78.96 | 0.416 | 11.1 | 0.655 | 1.66 | -- | -- | -- | 0.213 | 1.08 | -- | -- | -- | -- |
| 163.32 | 0.598 | 11 | 1.16 | -- | -2.44 | -- | -- | 0.571 | -- | 14.22 | 6039 | -- | -- |
| 80.43 | 0.418 | 11.1 | -- | 1.7 | -0.452 | -- | -- | 0.0913 | 1.08 | 28.56 | 5765 | -- | -- |
| 249.4 | 0.738 | 11.1 | 0.718 | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
| 90.26 | 0.444 | 11.1 | -- | 1.67 | -- | -- | -- | 0.14 | 1.1 | -- | -- | -- | -- |
| 196.73 | 0.655 | 11 | -- | -- | -2.07 | -- | -- | 0.402 | -- | 8.708 | 973 | -- | -- |
| 262.98 | 0.757 | 11.1 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 3 | 58.49 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 12 | 58.99 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 21 | 59.62 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 28 | 59.70 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 29 | 59.71 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 35 | 59.84 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 45 | 60.12 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 72 | 60.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 78 | 60.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 82 | 60.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 99 | 60.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 100 | 60.92 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 105 | 60.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 106 | 61.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 107 | 61.00 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 118 | 61.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 124 | 61.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 128 | 61.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 145 | 61.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 173 | 61.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 180 | 61.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 188 | 61.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 193 | 61.30 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 210 | 61.33 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 211 | 61.33 | temperature | 15 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 222 | 61.34 | temperature | 15 | 4320 | > th | dose dependent | rect. | 9 | 22 |
| 262 | 61.37 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 263 | 61.37 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 20 |
| 274 | 61.37 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 279 | 61.38 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 291 | 61.38 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 295 | 61.39 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 306 | 61.39 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 311 | 61.40 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 312 | 61.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 337 | 61.41 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 350 | 61.41 | temperature | 15 | 4320 | > th | dose dependent | sin | 16 | NA |
| 351 | 61.41 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 436 | 61.45 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 10 |
| 474 | 61.47 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 12 |
| 480 | 61.47 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 15 |
| 498 | 61.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 11 |
| 517 | 61.49 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 537 | 61.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 575 | 61.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 605 | 61.52 | temperature | 15 | 4320 | > th | dose dependent | sin | 6 | NA |
| 781 | 61.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 782 | 61.61 | temperature | 15 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 803 | 61.62 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 806 | 61.62 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 11 |
| 818 | 61.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 825 | 61.63 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 846 | 61.64 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 874 | 61.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 881 | 61.66 | temperature | 15 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 895 | 61.67 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 939 | 61.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 970 | 61.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 972 | 61.71 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 973 | 61.71 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 4 |