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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0136300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0409) R2 : 0.086
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.68 (0.565) R2dE : 0.0856 R2E : 0.0859
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0159 (0.0862) R2dN8 : 8.73e-05 R2N8 : 0.000458
σ : 0.767
deviance : 271.35
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.9385
memory length : 164
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.23
open length of G : 1.22

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.14 0.753 2.9 -0.288 0.121 3.97 0.445 -12.4 -0.048 15 0.9995 170 8.3 0.984
268.96 0.764 2.89 -0.296 0.0943 3.52 0.21 -- -0.0432 14.8 0.9898 164 8.3 1.17
257.77 0.748 2.9 -0.284 0.123 4 -- -12.1 -0.0427 15.5 0.9948 170 8.3 1
268.63 0.763 2.89 -0.289 0.113 3.54 -- -- -0.0442 15.4 0.913 164 8.27 1.19
258.64 0.749 2.9 -0.285 -- 4.02 -- -12.1 -0.0476 -- 0.9999 170 8.3 0.997
292.75 0.802 2.9 -0.275 0.166 -- 0.207 -- -0.089 13.8 -- -- -- --
292.91 0.801 2.9 -0.269 0.166 -- -- -- -0.088 13.5 -- -- -- --
269.19 0.764 2.89 -0.291 -- 3.62 -- -- -0.043 -- 0.9147 164 8.27 1.2
270.7 0.766 2.88 -- 0.105 3.63 -- -- -0.0367 16.4 0.9101 164 8.25 1.22
294.59 0.802 2.9 -0.275 -- -- -- -- -0.0916 -- -- -- -- --
294.81 0.803 2.89 -- 0.17 -- -- -- -0.0581 13.6 -- -- -- --
271.35 0.767 2.88 -- -- 3.68 -- -- -0.0159 -- 0.9385 164 8.23 1.22
296.59 0.804 2.89 -- -- -- -- -- -0.0611 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.90 wind 1.0 90 < th dose independent rect. 8 1
2 268.36 humidity 90.0 90 > th dose dependent rect. 24 1
13 271.62 wind 1.0 90 < th dose dependent rect. 24 1
14 271.80 radiation 10.0 30 < th dose independent rect. 9 1
19 272.22 atmosphere 1005.0 10 < th dose independent rect. 24 2
21 272.32 humidity 90.0 90 > th dose independent rect. 24 2
24 272.46 atmosphere 1005.0 90 < th dose independent rect. 24 1
35 272.79 wind 1.0 90 < th dose dependent rect. 8 1
36 272.85 precipitation 0.1 30 > th dose independent rect. 21 5
40 272.85 precipitation 0.1 30 > th dose dependent rect. 21 5
66 275.76 wind 1.0 90 < th dose independent rect. 24 1
67 275.76 radiation 10.0 90 < th dose dependent rect. 9 1
88 277.89 atmosphere 1005.0 10 < th dose dependent rect. 2 1
90 277.90 wind 7.0 90 > th dose independent rect. 21 1
92 277.94 wind 7.0 90 > th dose dependent rect. 21 1
112 278.02 precipitation 0.1 90 > th dose independent rect. 21 1
114 278.02 precipitation 0.1 90 > th dose dependent rect. 21 1
151 278.16 atmosphere 1005.0 10 < th dose dependent rect. 24 3
154 278.19 radiation 10.0 10 < th dose dependent rect. 9 1
238 279.43 radiation 10.0 270 < th dose independent rect. 18 16
255 279.60 atmosphere 1005.0 720 < th dose independent rect. 22 3
277 280.15 radiation 20.0 270 < th dose dependent rect. 18 16
283 280.26 precipitation 0.1 10 > th dose independent rect. 21 1
294 280.26 precipitation 0.1 10 > th dose dependent rect. 21 1
306 280.33 wind 5.0 90 > th dose independent rect. 11 3
329 280.60 humidity 80.0 10 > th dose independent rect. 17 1
350 280.77 wind 5.0 90 > th dose dependent rect. 12 1
352 280.78 humidity 90.0 270 > th dose dependent rect. 22 4
364 280.97 atmosphere 1010.0 10 < th dose dependent rect. 24 7
367 281.03 wind 5.0 90 > th dose independent rect. 12 1
374 281.12 humidity 90.0 90 > th dose dependent rect. 24 6
407 281.35 wind 7.0 30 > th dose dependent sin 10 NA
443 281.81 radiation 10.0 270 < th dose independent rect. 6 4
446 281.84 humidity 90.0 90 > th dose independent rect. 24 6
447 281.84 atmosphere 1005.0 10 < th dose independent rect. 24 6
450 281.89 radiation 1.0 720 < th dose dependent rect. 15 1
453 281.94 radiation 1.0 720 < th dose independent rect. 14 2
460 281.98 atmosphere 1005.0 90 < th dose independent rect. 23 11
467 282.05 humidity 80.0 1440 > th dose independent rect. 12 1
468 282.05 wind 5.0 90 > th dose dependent rect. 11 3
478 282.12 humidity 60.0 1440 > th dose dependent rect. 12 1
488 282.18 humidity 80.0 1440 < th dose independent rect. 12 1
540 282.26 temperature 25.0 30 < th dose dependent rect. 1 1
548 282.31 atmosphere 1010.0 720 < th dose dependent rect. 22 4
557 282.33 atmosphere 1010.0 10 < th dose dependent rect. 24 10
562 282.36 radiation 1.0 1440 < th dose independent rect. 11 1
563 282.36 wind 5.0 90 > th dose independent rect. 20 18
564 282.36 radiation 1.0 1440 < th dose dependent rect. 11 1
569 282.39 humidity 70.0 90 > th dose dependent rect. 16 1
578 282.42 atmosphere 1005.0 10 < th dose independent rect. 24 11
587 282.48 wind 7.0 4320 > th dose independent rect. 15 1
611 282.59 wind 5.0 270 > th dose dependent rect. 9 4
619 282.63 humidity 50.0 10 > th dose independent rect. 2 23
630 282.66 atmosphere 1010.0 10 < th dose dependent rect. 24 19
637 282.68 humidity 60.0 90 > th dose independent rect. 18 21
643 282.69 atmosphere 1010.0 30 < th dose dependent rect. 1 17
650 282.74 temperature 25.0 30 < th dose independent rect. 7 8
652 282.75 wind 5.0 270 > th dose dependent rect. 10 1
669 282.78 atmosphere 1005.0 30 > th dose independent rect. 21 14
679 282.80 precipitation 0.1 90 > th dose independent rect. 15 8
682 282.81 temperature 25.0 30 < th dose independent rect. 7 16
690 282.83 wind 3.0 90 < th dose dependent rect. 24 6
702 282.87 wind 7.0 4320 < th dose independent rect. 15 1
705 282.87 radiation 1.0 90 < th dose dependent rect. 16 1
741 282.95 radiation 1.0 90 < th dose independent rect. 16 1
748 282.97 precipitation 0.1 30 > th dose dependent rect. 13 10
769 283.02 atmosphere 1005.0 720 > th dose independent rect. 21 4
771 283.02 wind 7.0 90 < th dose independent rect. 21 23
775 283.03 humidity 70.0 10 > th dose dependent rect. 17 1
789 283.08 humidity 60.0 90 > th dose independent rect. 6 9
801 283.13 atmosphere 1005.0 90 < th dose independent rect. 23 19
820 283.18 wind 5.0 90 > th dose dependent rect. 20 18
860 283.31 radiation 1.0 720 < th dose independent rect. 14 12
861 283.31 humidity 60.0 90 > th dose independent rect. 6 17
945 283.43 humidity 90.0 1440 < th dose dependent rect. 12 1
968 283.47 humidity 60.0 90 > th dose independent rect. 2 22
976 283.49 temperature 25.0 30 < th dose independent rect. 19 20
996 283.54 radiation 1.0 1440 > th dose independent rect. 14 1