Os03g0136200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2).
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Os03g0136200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.14 | 0.367 | 11.6 | -0.574 | 1.89 | -0.771 | 0.173 | 1.39 | -0.359 | 15.3 | 9.51 | 15 | -- | -- |
| 68.13 | 0.384 | 11.6 | -0.652 | 1.95 | -0.677 | -1.06 | -- | -0.375 | 15.1 | 9.38 | 12 | -- | -- |
| 61.01 | 0.364 | 11.6 | -0.576 | 1.88 | -0.777 | -- | 1.32 | -0.363 | 15.3 | 9.338 | 14 | -- | -- |
| 71.47 | 0.394 | 11.6 | -0.659 | 1.93 | -0.702 | -- | -- | -0.349 | 15.2 | 9.3 | 10 | -- | -- |
| 128.54 | 0.528 | 11.6 | -0.34 | -- | -1.82 | -- | 2.7 | -0.358 | -- | 8.21 | 193 | -- | -- |
| 82.08 | 0.425 | 11.6 | -0.688 | 2.51 | -- | -1.19 | -- | -0.39 | 14.3 | -- | -- | -- | -- |
| 87.22 | 0.437 | 11.6 | -0.721 | 2.51 | -- | -- | -- | -0.397 | 14.4 | -- | -- | -- | -- |
| 90.74 | 0.444 | 11.6 | -0.963 | -- | -2.04 | -- | -- | -0.415 | -- | 1.873 | 293 | -- | -- |
| 83.39 | 0.425 | 11.6 | -- | 1.94 | -0.727 | -- | -- | -0.285 | 15.2 | 9.362 | 10 | -- | -- |
| 458.76 | 1 | 11.7 | -0.827 | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
| 100.91 | 0.47 | 11.6 | -- | 2.52 | -- | -- | -- | -0.317 | 14.4 | -- | -- | -- | -- |
| 108.51 | 0.485 | 11.6 | -- | -- | -2.07 | -- | -- | -0.385 | -- | 1.879 | 293 | -- | -- |
| 476.79 | 1.02 | 11.6 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 4 | 57.93 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 19 |
| 5 | 57.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 8 | 58.19 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 9 | 58.24 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 16 | 59.07 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 20 | 59.26 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 21 | 59.30 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 22 | 59.32 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 29 | 59.41 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 30 | 59.45 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 39 | 59.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 40 | 59.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 53 | 59.76 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 75 | 60.13 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 76 | 60.19 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 79 | 60.28 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 112 | 60.54 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 119 | 60.67 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 20 |
| 123 | 60.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 129 | 60.73 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 132 | 60.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 134 | 60.78 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 135 | 60.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 137 | 60.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 138 | 60.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 140 | 60.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 142 | 60.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 164 | 60.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 183 | 61.07 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 194 | 61.11 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 196 | 61.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 197 | 61.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 198 | 61.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 202 | 61.16 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 206 | 61.18 | wind | 5.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 208 | 61.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 209 | 61.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 218 | 61.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 15 |
| 219 | 61.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 230 | 61.30 | radiation | 1.0 | 90 | > th | dose independent | sin | 0 | NA |
| 232 | 61.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 234 | 61.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 240 | 61.36 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 249 | 61.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 256 | 61.43 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 279 | 61.49 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 284 | 61.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 285 | 61.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 309 | 61.63 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 310 | 61.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 311 | 61.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 314 | 61.65 | radiation | 10.0 | 10 | < th | dose independent | no | NA | NA |
| 317 | 61.66 | radiation | 10.0 | 10 | < th | dose independent | rect. | 9 | 23 |
| 320 | 61.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 321 | 61.68 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 7 |
| 344 | 61.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 348 | 61.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 350 | 61.74 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 352 | 61.75 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 370 | 61.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 372 | 61.82 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 376 | 61.83 | radiation | 1.0 | 10 | > th | dose independent | rect. | 7 | 9 |
| 393 | 61.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 423 | 62.01 | radiation | 10.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 428 | 62.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 435 | 62.06 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 447 | 62.09 | humidity | 70.0 | 30 | > th | dose independent | rect. | 3 | 6 |
| 451 | 62.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 453 | 62.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 469 | 62.19 | radiation | 10.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 470 | 62.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 487 | 62.25 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 514 | 62.33 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 517 | 62.34 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 536 | 62.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 564 | 62.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 566 | 62.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 588 | 62.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 8 |
| 590 | 62.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 597 | 62.58 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 601 | 62.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 602 | 62.59 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 8 |
| 607 | 62.62 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 658 | 62.70 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 8 |
| 660 | 62.70 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 674 | 62.74 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 688 | 62.78 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 709 | 62.84 | radiation | 10.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 751 | 62.91 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 818 | 63.02 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 844 | 63.07 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 18 |
| 847 | 63.07 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 18 |
| 882 | 63.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 884 | 63.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 937 | 63.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 938 | 63.23 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 939 | 63.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 951 | 63.24 | radiation | 10.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 955 | 63.25 | radiation | 10.0 | 10 | < th | dose independent | sin | 1 | NA |
| 958 | 63.25 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 987 | 63.31 | radiation | 30.0 | 10 | < th | dose independent | rect. | 13 | 9 |
| 995 | 63.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 19 |