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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0135800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.81 (0.0377) R2 : 0.787
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.99 (0.109) R2dC : 0.432 R2C : 0.637
β3 : -1.87 (0.117) R2dE : 0.145 R2E : 0.356
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.179 (0.0795) R2dN8 : 0.00311 R2N8 : 0.000726
σ : 0.708
deviance : 230.88
__
_____
C
peak time of C : 18.4
E
wheather : radiation
threshold : 55.56
memory length : 331
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.23
open length of G : 7.59

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.01 0.706 4.8 0.161 3.03 -1.8 -0.354 -1.47 0.208 18.5 47.05 332 4.22 7.63
230.26 0.707 4.81 0.139 3.02 -1.8 0.333 -- 0.196 18.5 53.76 326 4.28 7.55
226.15 0.7 4.8 0.171 3.02 -1.81 -- -1.26 0.21 18.5 51.35 328 4.24 7.62
230.47 0.707 4.81 0.125 3 -1.85 -- -- 0.195 18.4 55.82 329 4.24 7.58
292.19 0.796 4.71 0.257 -- -3.33 -- -0.865 0.358 -- 146.2 344 0.00828 10.3
262.48 0.76 4.83 0.193 3.9 -- 0.611 -- 0.268 19.6 -- -- -- --
263.52 0.76 4.83 0.179 3.9 -- -- -- 0.269 19.6 -- -- -- --
292.2 0.796 4.71 0.204 -- -3.3 -- -- 0.3 -- 178 338 0.00696 10.4
230.88 0.708 4.81 -- 2.99 -1.87 -- -- 0.179 18.4 55.56 331 4.23 7.59
1078.61 1.53 4.73 0.123 -- -- -- -- 0.209 -- -- -- -- --
264.36 0.761 4.83 -- 3.9 -- -- -- 0.249 19.6 -- -- -- --
293.28 0.798 4.72 -- -- -3.29 -- -- 0.284 -- 177.7 338 0.0167 10.4
1079.01 1.53 4.74 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.32 radiation 40.0 270 < th dose dependent rect. 5 7
2 230.36 radiation 40.0 270 < th dose independent rect. 4 8
8 231.66 temperature 10.0 270 > th dose dependent rect. 9 9
16 232.28 humidity 50.0 270 > th dose dependent rect. 5 7
34 233.23 temperature 25.0 90 > th dose independent rect. 12 7
37 233.55 radiation 40.0 90 < th dose independent rect. 8 17
39 233.67 radiation 40.0 270 < th dose independent rect. 5 18
40 233.71 humidity 50.0 30 > th dose dependent rect. 8 4
44 233.87 radiation 40.0 270 < th dose dependent rect. 7 3
61 234.57 temperature 30.0 270 < th dose dependent rect. 5 16
66 234.77 humidity 70.0 270 > th dose independent rect. 5 7
67 234.80 radiation 30.0 270 < th dose independent rect. 17 18
69 234.85 humidity 70.0 270 > th dose independent rect. 17 19
81 235.10 temperature 25.0 270 > th dose independent rect. 10 8
82 235.12 temperature 15.0 10 > th dose dependent rect. 12 8
91 235.37 radiation 30.0 270 < th dose independent rect. 18 16
96 235.41 radiation 40.0 270 < th dose dependent rect. 16 20
97 235.44 temperature 30.0 270 < th dose independent rect. 4 7
102 235.46 humidity 50.0 270 > th dose dependent rect. 18 17
109 235.63 temperature 10.0 270 > th dose dependent rect. 24 16
112 235.67 radiation 40.0 270 < th dose dependent rect. 6 17
115 235.71 radiation 40.0 270 < th dose dependent rect. 17 18
118 235.74 humidity 80.0 270 < th dose independent rect. 10 6
129 235.91 temperature 30.0 270 < th dose dependent rect. 5 7
132 235.93 humidity 90.0 270 < th dose independent rect. 9 9
138 235.97 temperature 30.0 90 < th dose dependent rect. 8 15
142 236.00 radiation 40.0 90 < th dose dependent rect. 8 17
150 236.10 temperature 15.0 270 > th dose independent rect. 24 15
167 236.30 humidity 70.0 90 > th dose independent rect. 8 4
177 236.40 radiation 1.0 270 > th dose independent rect. 10 8
188 236.51 temperature 25.0 90 > th dose independent rect. 12 10
199 236.61 temperature 30.0 90 < th dose independent rect. 19 17
204 236.70 radiation 1.0 270 > th dose independent rect. 10 19
217 236.73 temperature 15.0 270 > th dose independent rect. 10 8
260 237.09 temperature 25.0 270 < th dose independent rect. 5 16
317 237.54 temperature 30.0 270 < th dose dependent rect. 23 6
335 237.66 atmosphere 1010.0 270 < th dose independent rect. 10 7
336 237.66 temperature 25.0 10 > th dose independent rect. 12 10
339 237.71 precipitation 0.1 270 < th dose independent rect. 11 17
340 237.71 precipitation 0.1 270 < th dose dependent rect. 11 17
354 237.82 temperature 30.0 270 < th dose independent rect. 17 17
367 237.94 radiation 1.0 90 > th dose independent rect. 12 17
374 237.98 radiation 1.0 90 > th dose independent rect. 12 7
386 238.02 humidity 70.0 90 > th dose independent rect. 8 17
389 238.03 humidity 70.0 270 > th dose dependent rect. 6 16
404 238.14 wind 1.0 90 > th dose independent rect. 12 7
430 238.36 temperature 15.0 30 > th dose independent rect. 19 17
450 238.45 humidity 90.0 270 < th dose dependent rect. 10 5
477 238.60 temperature 30.0 270 < th dose dependent rect. 7 3
493 238.65 temperature 30.0 90 < th dose dependent rect. 8 5
495 238.66 temperature 30.0 270 < th dose independent rect. 16 19
497 238.67 temperature 10.0 270 > th dose independent rect. 4 7
499 238.67 atmosphere 995.0 270 > th dose independent rect. 4 7
500 238.67 atmosphere 1015.0 270 < th dose independent rect. 4 7
501 238.67 temperature 10.0 270 > th dose independent rect. 11 17
514 238.75 atmosphere 995.0 270 > th dose dependent rect. 4 7
522 238.77 wind 9.0 270 < th dose independent rect. 11 17
529 238.80 temperature 30.0 270 < th dose dependent sin 23 NA
541 238.86 atmosphere 1015.0 90 < th dose dependent rect. 12 7
543 238.89 precipitation 0.1 90 < th dose independent rect. 12 7
544 238.89 precipitation 0.1 90 < th dose dependent rect. 12 7
552 238.95 atmosphere 1010.0 90 < th dose independent rect. 12 7
558 238.98 wind 9.0 270 < th dose independent rect. 4 7
560 238.98 humidity 50.0 270 > th dose independent rect. 4 7
565 239.01 temperature 10.0 90 > th dose independent rect. 12 7
568 239.01 precipitation 0.1 270 < th dose independent rect. 4 7
570 239.01 atmosphere 995.0 90 > th dose independent rect. 19 17
574 239.01 precipitation 0.1 270 < th dose dependent rect. 4 7
580 239.04 wind 1.0 270 > th dose independent rect. 4 7
584 239.07 humidity 80.0 270 > th dose independent rect. 5 18
594 239.14 wind 9.0 90 < th dose independent rect. 12 7
621 239.25 atmosphere 995.0 270 > th dose independent rect. 17 17
644 239.37 temperature 10.0 90 > th dose dependent sin 21 NA
653 239.39 temperature 10.0 270 > th dose dependent sin 0 NA
654 239.40 precipitation 0.1 90 < th dose independent rect. 19 17
657 239.40 precipitation 0.1 90 < th dose dependent rect. 19 17
674 239.47 humidity 80.0 270 < th dose independent rect. 23 17
690 239.49 temperature 15.0 270 > th dose independent rect. 15 9
722 239.64 temperature 15.0 90 > th dose dependent rect. 2 17
770 239.83 temperature 10.0 1440 > th dose independent rect. 13 7
773 239.83 temperature 10.0 1440 > th dose independent rect. 20 17
776 239.83 atmosphere 995.0 1440 > th dose independent rect. 20 17
823 239.98 precipitation 0.1 270 < th dose independent rect. 10 8
824 239.98 humidity 50.0 270 > th dose independent rect. 17 17
825 239.98 precipitation 0.1 270 < th dose dependent rect. 10 8
826 239.99 wind 9.0 90 < th dose independent rect. 19 17
829 240.00 wind 9.0 270 < th dose independent rect. 10 8
874 240.17 precipitation 0.1 270 < th dose independent rect. 24 15
876 240.17 precipitation 0.1 270 < th dose dependent rect. 24 15
896 240.22 humidity 90.0 10 < th dose independent rect. 12 7
902 240.24 humidity 50.0 30 > th dose independent rect. 12 7
978 240.43 atmosphere 995.0 270 > th dose independent rect. 15 9
981 240.43 atmosphere 1015.0 90 < th dose independent rect. 19 17
988 240.45 temperature 30.0 90 < th dose independent rect. 7 5