Os03g0135400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0135400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.27 | 0.449 | 7.32 | 1.93 | 0.702 | 0.434 | -0.0906 | 3.79 | 0.442 | 23.1 | 20.7 | 8 | -- | -- |
| 101.32 | 0.469 | 7.4 | 1.23 | 0.737 | 0.704 | -0.989 | -- | 0.243 | 23.4 | 19.9 | 2 | -- | -- |
| 91.21 | 0.448 | 7.32 | 1.95 | 0.703 | 0.435 | -- | 3.92 | 0.447 | 23.1 | 20.7 | 6 | -- | -- |
| 105.47 | 0.478 | 7.4 | 1.28 | 0.747 | 0.719 | -- | -- | 0.242 | 23.3 | 19.9 | 2 | -- | -- |
| 116.41 | 0.505 | 7.28 | 2.12 | -- | -0.0778 | -- | 4.34 | 0.549 | -- | 20.99 | 4 | -- | -- |
| 109.25 | 0.49 | 7.37 | 1.38 | 0.583 | -- | -1.01 | -- | 0.36 | 22.4 | -- | -- | -- | -- |
| 113.18 | 0.498 | 7.37 | 1.43 | 0.596 | -- | -- | -- | 0.365 | 22 | -- | -- | -- | -- |
| 115.87 | 0.501 | 7.4 | 1.16 | -- | 0.916 | -- | -- | 0.184 | -- | 18.2 | 709 | -- | -- |
| 144.7 | 0.56 | 7.45 | -- | 0.886 | 1.23 | -- | -- | 0.0306 | 23.8 | 18.1 | 2 | -- | -- |
| 134.57 | 0.542 | 7.36 | 1.43 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 166.84 | 0.604 | 7.41 | -- | 0.602 | -- | -- | -- | 0.206 | 22.2 | -- | -- | -- | -- |
| 148.63 | 0.568 | 7.43 | -- | -- | 1.52 | -- | -- | 0.0169 | -- | 8.445 | 753 | -- | -- |
| 188.84 | 0.641 | 7.39 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.80 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 2 | 87.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 3 | 87.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 12 | 88.82 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 22 |
| 17 | 89.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 18 | 89.13 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 26 | 89.59 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 33 | 89.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 42 | 89.98 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 48 | 90.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 62 | 90.26 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 64 | 90.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 72 | 90.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 74 | 90.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 83 | 90.63 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 87 | 90.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 99 | 90.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 114 | 90.83 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 121 | 90.93 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 144 | 91.14 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 20 |
| 158 | 91.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 162 | 91.22 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 20 |
| 170 | 91.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 183 | 91.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 186 | 91.35 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 188 | 91.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 224 | 91.54 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 239 | 91.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 252 | 91.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 288 | 91.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 290 | 91.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 300 | 91.85 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 316 | 91.88 | temperature | 20 | 10 | > th | dose dependent | sin | 14 | NA |
| 322 | 91.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 343 | 92.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 418 | 92.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 468 | 92.36 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 489 | 92.39 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 490 | 92.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 535 | 92.46 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 563 | 92.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 577 | 92.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 626 | 92.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 628 | 92.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 650 | 92.64 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 660 | 92.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 676 | 92.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 685 | 92.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 706 | 92.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 775 | 92.80 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 777 | 92.80 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 778 | 92.80 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 805 | 92.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 812 | 92.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 831 | 92.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 889 | 92.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 929 | 92.94 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 21 |