Os03g0135300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutathione S-transferase GST 10 (EC 2.5.1.18).
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Os03g0135300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutathione S-transferase GST 10 (EC 2.5.1.18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.72 | 0.36 | 13.4 | 0.57 | 2.19 | 0.643 | -0.0128 | 3.16 | -0.045 | 22.5 | 39.29 | 270 | -- | -- |
| 64.88 | 0.375 | 13.4 | 0.491 | 2.2 | 0.497 | -0.293 | -- | -0.0549 | 22.5 | 38.86 | 395 | -- | -- |
| 58.7 | 0.357 | 13.4 | 0.558 | 2.18 | 0.634 | -- | 3.1 | -0.0474 | 22.5 | 38.73 | 275 | -- | -- |
| 64.62 | 0.374 | 13.4 | 0.523 | 2.23 | 0.519 | -- | -- | -0.0552 | 22.7 | 19.91 | 386 | -- | -- |
| 273.24 | 0.77 | 13.4 | 0.395 | -- | 1.3 | -- | 0.373 | -0.391 | -- | 25.47 | 955 | -- | -- |
| 68.46 | 0.388 | 13.4 | 0.523 | 2.14 | -- | -0.414 | -- | -0.0184 | 22.2 | -- | -- | -- | -- |
| 69.14 | 0.389 | 13.4 | 0.539 | 2.14 | -- | -- | -- | -0.0174 | 22.2 | -- | -- | -- | -- |
| 209.59 | 0.677 | 13.3 | 0.565 | -- | -2.07 | -- | -- | -0.0365 | -- | -17.85 | 1029 | -- | -- |
| 71.23 | 0.393 | 13.4 | -- | 2.18 | 0.576 | -- | -- | -0.0991 | 22.8 | 19.52 | 396 | -- | -- |
| 346.95 | 0.87 | 13.3 | 0.571 | -- | -- | -- | -- | -0.0123 | -- | -- | -- | -- | -- |
| 76.81 | 0.41 | 13.4 | -- | 2.14 | -- | -- | -- | -0.0774 | 22.3 | -- | -- | -- | -- |
| 218.01 | 0.69 | 13.3 | -- | -- | -2.07 | -- | -- | -0.0992 | -- | -0.0004519 | 1038 | -- | -- |
| 355.55 | 0.88 | 13.3 | -- | -- | -- | -- | -- | -0.0756 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 8 | 54.37 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 8 |
| 15 | 54.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 17 | 55.01 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 24 | 55.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 31 | 55.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 54 | 55.86 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 92 | 56.50 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 22 |
| 98 | 56.55 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 18 |
| 104 | 56.63 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 9 |
| 107 | 56.64 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 111 | 56.69 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 122 | 56.81 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 135 | 56.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 145 | 57.05 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 20 |
| 149 | 57.08 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 240 | 57.63 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 257 | 57.73 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 258 | 57.74 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 6 |
| 261 | 57.76 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 6 |
| 265 | 57.77 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 20 |
| 277 | 57.82 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 282 | 57.85 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 6 | 17 |
| 294 | 57.91 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 302 | 57.93 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 339 | 58.06 | wind | 3 | 14400 | < th | dose dependent | sin | 15 | NA |
| 345 | 58.07 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 399 | 58.22 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 422 | 58.25 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 18 |
| 434 | 58.28 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 438 | 58.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 15 |
| 454 | 58.31 | radiation | 40 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 475 | 58.35 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 7 |
| 488 | 58.39 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 19 |
| 522 | 58.45 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 19 |
| 551 | 58.49 | radiation | 40 | 270 | < th | dose independent | rect. | 15 | 22 |
| 560 | 58.50 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 566 | 58.50 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 573 | 58.51 | wind | 3 | 14400 | < th | dose dependent | rect. | 15 | 13 |
| 586 | 58.53 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 603 | 58.56 | radiation | 40 | 270 | > th | dose dependent | sin | 5 | NA |
| 604 | 58.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 16 | 10 |
| 672 | 58.64 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 695 | 58.66 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 727 | 58.69 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 729 | 58.70 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 733 | 58.71 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 13 |
| 756 | 58.73 | temperature | 15 | 270 | > th | dose independent | rect. | 3 | 9 |
| 759 | 58.74 | wind | 3 | 14400 | < th | dose independent | sin | 15 | NA |
| 765 | 58.74 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 776 | 58.75 | radiation | 40 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 788 | 58.76 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 815 | 58.77 | radiation | 40 | 270 | > th | dose dependent | no | NA | NA |
| 971 | 58.78 | wind | 1 | 14400 | < th | dose independent | sin | 20 | NA |