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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0135200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase GST 9 (EC 2.5.1.18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.033) R2 : 0.531
β1 : 0.842 (0.124) R2dD : 0.0509 R2D : -0.0135
β2 : 1.5 (0.0809) R2dC : 0.366 R2C : 0.28
β3 : -1.47 (0.098) R2dE : 0.248 R2E : 0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.235 (0.0703) R2dN8 : 0.0147 R2N8 : 0.0035
σ : 0.616
deviance : 174.94
__
_____
C
peak time of C : 21.8
E
wheather : temperature
threshold : 26.82
memory length : 2613
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.29 0.608 5.09 1.86 1.53 -1.96 -1.12 5.37 0.321 21.8 27.84 1215 -- --
173.12 0.613 5.23 0.998 1.55 -1.36 -1.37 -- 0.223 21.6 26.73 2630 -- --
172.09 0.611 5.1 1.84 1.54 -1.95 -- 5.03 0.33 21.9 27.77 1209 -- --
174.94 0.616 5.22 0.842 1.5 -1.47 -- -- 0.235 21.8 26.82 2613 -- --
297.57 0.803 5.05 1.93 -- -1.71 -- 4.92 0.324 -- 27.87 1431 -- --
252.33 0.745 5.21 0.329 1.35 -- -1.28 -- 0.225 21.4 -- -- -- --
258.34 0.753 5.21 0.376 1.36 -- -- -- 0.227 21.4 -- -- -- --
301.77 0.809 5.18 0.764 -- -1.21 -- -- 0.16 -- 27.66 2886 -- --
191.59 0.645 5.25 -- 1.49 -1.32 -- -- 0.0643 21.8 27.8 2598 -- --
366.36 0.894 5.17 0.384 -- -- -- -- 0.222 -- -- -- -- --
262.07 0.757 5.22 -- 1.36 -- -- -- 0.185 21.4 -- -- -- --
315.67 0.827 5.22 -- -- -1.09 -- -- 0.016 -- 28.74 2869 -- --
370.25 0.898 5.18 -- -- -- -- -- 0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.66 temperature 25 720 > th dose dependent sin 16 NA
4 171.05 temperature 30 1440 > th dose independent rect. 17 22
9 171.44 temperature 25 720 > th dose dependent rect. 11 12
11 171.49 temperature 25 720 > th dose dependent rect. 13 10
12 171.59 temperature 30 1440 < th dose independent rect. 17 22
19 171.82 temperature 30 1440 > th dose independent rect. 13 23
21 171.90 temperature 30 1440 > th dose independent no NA NA
22 171.90 temperature 30 1440 > th dose independent rect. 8 11
138 172.16 temperature 30 1440 < th dose independent rect. 13 23
142 172.29 temperature 30 1440 > th dose independent sin 18 NA
145 172.30 temperature 30 1440 < th dose independent rect. 24 21
148 172.31 temperature 30 1440 < th dose independent rect. 5 16
149 172.31 temperature 30 1440 < th dose independent rect. 3 18
150 172.31 temperature 30 1440 < th dose independent rect. 24 19
151 172.32 temperature 30 1440 < th dose independent rect. 5 14
152 172.32 temperature 30 1440 < th dose independent rect. 3 16
171 172.35 temperature 30 1440 < th dose independent rect. 8 13
177 172.36 temperature 30 1440 < th dose independent rect. 8 11
185 172.36 temperature 30 1440 < th dose independent rect. 5 20
188 172.36 temperature 30 1440 < th dose independent rect. 5 23
189 172.36 temperature 30 1440 < th dose independent rect. 20 23
198 172.37 temperature 30 1440 < th dose independent rect. 8 23
200 172.38 temperature 30 1440 < th dose independent no NA NA
215 172.39 temperature 30 1440 < th dose independent rect. 11 23
230 172.41 temperature 30 1440 < th dose independent rect. 8 20
286 172.56 temperature 25 720 > th dose dependent rect. 11 19
289 172.59 wind 3 43200 > th dose dependent rect. 3 12
302 172.71 temperature 25 720 > th dose dependent rect. 15 8
326 172.83 temperature 30 1440 < th dose independent sin 11 NA
328 172.87 temperature 30 1440 < th dose independent sin 19 NA
421 173.16 temperature 30 1440 > th dose independent rect. 9 6
441 173.23 wind 3 43200 > th dose dependent rect. 21 19
478 173.33 wind 3 43200 > th dose dependent rect. 24 16
483 173.36 temperature 30 1440 > th dose dependent rect. 18 21
517 173.57 temperature 30 1440 > th dose dependent rect. 8 7
532 173.58 temperature 30 1440 > th dose dependent rect. 10 5
536 173.66 wind 5 43200 < th dose dependent rect. 9 2
539 173.71 temperature 30 1440 < th dose independent rect. 24 15
542 173.73 temperature 30 1440 < th dose independent rect. 5 10
548 173.74 temperature 30 1440 < th dose independent rect. 3 12
565 173.77 temperature 30 1440 < th dose independent rect. 13 8
569 173.78 temperature 30 1440 < th dose independent rect. 13 6
574 173.79 temperature 30 1440 < th dose independent rect. 13 18
578 173.81 temperature 30 1440 < th dose independent rect. 8 7
579 173.81 temperature 30 1440 < th dose independent rect. 20 19
588 173.84 temperature 30 1440 < th dose independent rect. 13 12
589 173.84 temperature 30 1440 < th dose independent rect. 13 15
627 173.92 wind 3 43200 > th dose dependent sin 3 NA
634 173.99 temperature 30 1440 > th dose dependent sin 4 NA
696 174.20 temperature 30 1440 > th dose independent rect. 15 4
774 174.50 temperature 25 720 > th dose dependent rect. 15 17
791 174.63 temperature 30 1440 > th dose dependent no NA NA
917 174.69 temperature 30 4320 > th dose dependent rect. 16 3
934 174.73 temperature 30 1440 < th dose independent rect. 15 6
935 174.75 temperature 30 1440 < th dose independent rect. 15 4
974 174.82 temperature 30 1440 < th dose independent rect. 15 8
980 174.83 temperature 30 1440 < th dose independent rect. 15 10
981 174.84 temperature 30 1440 < th dose independent rect. 15 13