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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0134900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase GSTF14 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0426) R2 : 0.0151
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.237 (0.0898) R2dN8 : 0.0194 R2N8 : 0.0151
σ : 0.803
deviance : 295.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
287.56 0.797 3.27 0.0331 0.191 -0.271 -0.716 2.92 0.217 9.38 1.088 814 -- --
292.17 0.802 3.31 0.0105 0.18 -0.374 -0.365 -- 0.226 8.88 1.088 814 -- --
288.67 0.791 3.27 0.0529 0.207 -0.368 -- 2.54 0.199 10 1.185 1129 -- --
291.96 0.801 3.31 0.00644 0.191 -0.419 -- -- 0.222 8.54 1.3 1746 -- --
291.14 0.795 3.28 0.0252 -- -0.328 -- 2.86 0.207 -- 0.9279 1136 -- --
293.62 0.803 3.31 -0.0181 0.178 -- -0.286 -- 0.234 9.71 -- -- -- --
293.92 0.803 3.31 -0.0283 0.178 -- -- -- 0.234 10 -- -- -- --
293.99 0.802 3.31 0.00372 -- -0.381 -- -- 0.225 -- 1.3 1699 -- --
291.96 0.8 3.31 -- 0.192 -0.415 -- -- 0.221 8.51 1.327 1739 -- --
295.83 0.804 3.31 -0.0305 -- -- -- -- 0.234 -- -- -- -- --
293.94 0.802 3.31 -- 0.178 -- -- -- 0.237 10 -- -- -- --
293.99 0.801 3.31 -- -- -0.38 -- -- 0.224 -- 1.3 1694 -- --
295.86 0.803 3.31 -- -- -- -- -- 0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.98 temperature 25.0 30 > th dose dependent rect. 21 10
2 283.02 wind 3.0 30 > th dose independent rect. 8 6
7 283.59 wind 3.0 30 < th dose independent rect. 7 9
10 283.66 wind 3.0 30 > th dose independent rect. 6 8
17 284.10 temperature 25.0 90 > th dose independent rect. 22 9
19 284.16 wind 3.0 30 < th dose dependent sin 1 NA
22 284.25 wind 3.0 30 < th dose dependent rect. 7 9
46 285.21 temperature 25.0 10 > th dose dependent rect. 14 22
50 285.29 humidity 70.0 30 < th dose independent rect. 14 21
52 285.34 wind 3.0 30 > th dose independent rect. 2 12
53 285.34 humidity 80.0 30 < th dose dependent rect. 14 21
55 285.40 atmosphere 1005.0 1440 > th dose independent rect. 11 1
70 285.69 temperature 25.0 90 > th dose independent rect. 16 15
87 285.93 wind 3.0 30 > th dose independent rect. 8 11
88 285.96 wind 9.0 1440 < th dose independent rect. 3 1
89 285.96 temperature 10.0 1440 > th dose independent rect. 3 1
92 285.96 temperature 30.0 1440 < th dose independent rect. 3 1
96 285.96 humidity 50.0 1440 > th dose independent rect. 3 1
105 285.96 atmosphere 995.0 1440 > th dose independent rect. 3 1
106 285.96 radiation 1.0 1440 < th dose independent rect. 3 1
126 285.96 temperature 10.0 1440 > th dose independent rect. 4 23
129 285.96 radiation 1.0 1440 < th dose dependent rect. 3 1
137 286.01 wind 5.0 30 < th dose dependent rect. 1 10
138 286.02 wind 3.0 30 < th dose independent sin 2 NA
139 286.03 wind 3.0 10 > th dose independent rect. 9 1
147 286.11 atmosphere 1010.0 1440 < th dose dependent rect. 10 1
148 286.12 atmosphere 1005.0 720 < th dose independent rect. 11 2
156 286.21 wind 3.0 30 > th dose independent sin 2 NA
157 286.21 wind 3.0 10 < th dose dependent rect. 4 12
170 286.31 wind 1.0 10 > th dose independent rect. 22 16
172 286.31 temperature 25.0 10 > th dose dependent rect. 9 3
176 286.34 wind 5.0 30 < th dose dependent rect. 1 14
179 286.36 temperature 30.0 10 < th dose independent rect. 1 10
180 286.36 humidity 90.0 30 < th dose independent rect. 3 11
183 286.37 atmosphere 1005.0 30 < th dose independent rect. 9 7
185 286.37 humidity 90.0 10 < th dose independent rect. 24 14
193 286.43 wind 3.0 30 < th dose independent rect. 1 14
195 286.44 wind 3.0 30 < th dose independent rect. 7 14
198 286.46 humidity 90.0 1440 < th dose independent rect. 24 1
199 286.47 temperature 25.0 10 > th dose dependent rect. 7 5
231 286.60 wind 3.0 10 < th dose dependent rect. 4 7
237 286.63 wind 9.0 4320 > th dose independent rect. 15 1
243 286.67 atmosphere 1005.0 1440 > th dose independent rect. 1 15
261 286.73 temperature 25.0 90 > th dose independent rect. 10 1
263 286.73 wind 1.0 720 < th dose dependent rect. 6 22
269 286.75 humidity 90.0 10 < th dose independent rect. 22 16
280 286.79 temperature 25.0 30 > th dose dependent rect. 7 14
282 286.80 wind 3.0 30 > th dose independent rect. 6 13
286 286.81 atmosphere 1005.0 1440 < th dose independent rect. 1 15
288 286.83 wind 9.0 4320 < th dose independent rect. 15 1
289 286.83 wind 3.0 30 < th dose independent rect. 1 10
294 286.84 humidity 60.0 4320 < th dose dependent rect. 16 1
328 286.93 humidity 80.0 1440 < th dose independent rect. 7 1
331 286.93 wind 1.0 30 > th dose dependent rect. 4 10
363 287.00 radiation 1.0 90 < th dose independent rect. 8 3
368 287.00 radiation 1.0 90 < th dose dependent rect. 8 3
370 287.00 temperature 25.0 30 > th dose dependent rect. 7 9
371 287.01 atmosphere 1005.0 1440 > th dose independent sin 3 NA
414 287.08 temperature 25.0 10 > th dose dependent rect. 18 13
450 287.16 atmosphere 1010.0 10 < th dose independent rect. 6 1
453 287.16 wind 3.0 30 > th dose independent rect. 14 15
464 287.17 wind 1.0 720 < th dose independent rect. 6 22
482 287.20 atmosphere 1005.0 1440 < th dose independent sin 3 NA
492 287.21 humidity 70.0 10 < th dose independent rect. 11 3
512 287.23 wind 3.0 30 > th dose independent rect. 14 10
523 287.24 wind 3.0 30 < th dose independent rect. 11 14
543 287.26 temperature 30.0 90 > th dose independent rect. 16 23
550 287.27 wind 3.0 30 > th dose independent rect. 6 11
562 287.29 atmosphere 1010.0 270 > th dose independent rect. 8 1
577 287.30 wind 9.0 4320 > th dose dependent rect. 15 1
588 287.32 temperature 25.0 90 > th dose dependent rect. 5 1
592 287.33 humidity 90.0 1440 < th dose independent rect. 24 5
593 287.33 temperature 20.0 270 < th dose dependent rect. 8 1
596 287.34 precipitation 0.1 4320 < th dose independent rect. 11 1
600 287.34 precipitation 0.1 4320 < th dose dependent rect. 11 1
636 287.39 temperature 20.0 4320 > th dose independent rect. 19 1
637 287.39 atmosphere 1005.0 4320 > th dose independent rect. 6 1
638 287.39 atmosphere 1005.0 4320 < th dose independent rect. 6 1
648 287.40 wind 1.0 30 > th dose dependent rect. 9 5
651 287.41 temperature 25.0 90 > th dose independent rect. 5 1
655 287.42 wind 9.0 4320 < th dose independent rect. 12 1
681 287.44 temperature 25.0 90 < th dose independent rect. 17 15
696 287.46 humidity 90.0 30 < th dose dependent rect. 11 3
708 287.48 atmosphere 1005.0 4320 > th dose independent rect. 2 6
711 287.48 wind 1.0 720 < th dose dependent rect. 24 22
718 287.49 wind 1.0 90 > th dose independent rect. 8 23
742 287.51 atmosphere 995.0 30 > th dose dependent rect. 14 7
750 287.52 wind 1.0 720 < th dose independent rect. 24 22
756 287.52 wind 1.0 270 < th dose dependent rect. 7 15
758 287.53 atmosphere 1005.0 4320 < th dose independent rect. 2 6
759 287.53 wind 1.0 90 > th dose independent rect. 21 17
773 287.54 atmosphere 1000.0 1440 > th dose dependent rect. 10 1
774 287.54 atmosphere 1010.0 30 < th dose dependent rect. 6 1
775 287.54 humidity 70.0 4320 < th dose dependent rect. 16 3
785 287.55 humidity 50.0 30 > th dose independent rect. 11 23
794 287.56 wind 1.0 10 > th dose independent rect. 11 23
807 287.57 precipitation 0.1 14400 > th dose dependent rect. 20 7
815 287.59 wind 9.0 4320 > th dose independent rect. 12 1
825 287.59 wind 7.0 4320 > th dose dependent rect. 5 2
831 287.60 atmosphere 1005.0 4320 > th dose independent rect. 3 1
862 287.62 atmosphere 1000.0 1440 > th dose dependent rect. 10 3
878 287.63 humidity 50.0 720 > th dose independent rect. 3 8
879 287.63 temperature 25.0 90 < th dose independent rect. 23 9
880 287.63 wind 1.0 10 > th dose independent rect. 21 10
888 287.64 temperature 20.0 720 > th dose independent rect. 1 1
893 287.64 wind 3.0 30 > th dose independent rect. 14 19
945 287.67 wind 3.0 10 < th dose independent rect. 7 21
951 287.68 wind 3.0 30 > th dose independent rect. 6 1
952 287.68 wind 1.0 43200 > th dose independent rect. 9 2
966 287.69 temperature 20.0 4320 > th dose independent rect. 21 1
983 287.70 wind 1.0 10 > th dose independent rect. 9 22
993 287.71 wind 1.0 720 > th dose independent rect. 6 23
994 287.71 atmosphere 1010.0 1440 < th dose dependent sin 3 NA