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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0134500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0637) R2 : 0.711
β1 : -0.174 (0.338) R2dD : 0.000498 R2D : 0.0114
β2 : 2.1 (0.137) R2dC : 0.169 R2C : 0.0507
β3 : -4.17 (0.222) R2dE : 0.322 R2E : 0.28
β4 : -3.78 (0.499) R2dD*C : 0.0378 R2D*C : 0.0419
β5 : 11.1 (1.07) R2dD*E : 0.191 R2D*E : 0.29
γ1 : -0.0223 (0.149) R2dN8 : 3.1e-05 R2N8 : -0.00647
σ : 1.03
deviance : 479.64
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_____
C
peak time of C : 11.8
E
wheather : temperature
threshold : 19.09
memory length : 947
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.12
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
479.64 1.03 5.42 -0.174 2.1 -4.17 -3.78 11.1 -0.0223 11.8 19.09 947 2.12 --
584.27 1.13 5.69 -2.82 4.69 -6.82 -2.65 -- -0.852 11.9 7.05 967 1.91 --
532.27 1.07 5.38 -0.138 2.17 -4.28 -- 11.9 0.0359 10.5 19.3 965 3.23 --
615.28 1.16 5.68 -2.87 4.81 -6.92 -- -- -0.809 11.5 8.04 941 2.23 --
582.61 1.12 5.51 -0.436 -- -4.36 -- 12.2 -0.311 -- -37.3 1496 7.27 --
904.08 1.41 5.96 -4 1.34 -- -3.26 -- -1.73 11.6 -- -- -- --
945.46 1.44 5.96 -4.14 1.39 -- -- -- -1.75 10.7 -- -- -- --
694.1 1.23 5.81 -3.05 -- -4.34 -- -- -0.89 -- -43.55 1489 7.63 --
807.72 1.32 5.58 -- 3.75 -6.89 -- -- -0.278 11.7 13.3 975 2.26 --
1065.37 1.53 6 -4.17 -- -- -- -- -1.76 -- -- -- -- --
1397.48 1.75 5.86 -- 1.43 -- -- -- -1.29 10.9 -- -- -- --
749.7 1.28 5.61 -- -- -6.04 -- -- -0.00103 -- -45.02 10272 8.1 --
1523.8 1.82 5.89 -- -- -- -- -- -1.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 500.82 temperature 20 720 > th dose dependent sin 7 NA
4 510.14 temperature 20 720 > th dose dependent rect. 21 16
11 517.79 temperature 20 4320 < th dose independent rect. 21 2
16 519.93 temperature 20 4320 > th dose independent rect. 21 2
25 523.46 temperature 20 720 > th dose dependent rect. 24 10
27 524.13 humidity 90 43200 > th dose dependent rect. 13 1
31 525.89 temperature 20 4320 < th dose independent rect. 18 8
34 526.88 temperature 15 43200 < th dose dependent rect. 2 2
41 527.43 temperature 20 4320 > th dose independent rect. 18 8
61 529.11 temperature 15 43200 < th dose dependent rect. 23 6
75 530.10 temperature 20 4320 < th dose independent rect. 17 13
109 532.19 temperature 20 4320 > th dose independent rect. 16 14
118 532.56 radiation 30 43200 < th dose independent rect. 2 5
131 533.46 temperature 20 4320 < th dose independent sin 14 NA
147 534.08 temperature 20 4320 > th dose independent sin 14 NA
166 534.84 temperature 15 43200 > th dose independent rect. 23 2
172 535.28 temperature 15 43200 < th dose independent rect. 24 1
176 535.50 humidity 60 43200 < th dose independent rect. 19 2
178 535.60 humidity 60 43200 < th dose independent rect. 19 8
223 537.15 humidity 60 43200 > th dose independent rect. 19 3
227 537.28 humidity 60 43200 < th dose independent rect. 19 6
230 537.35 humidity 80 43200 > th dose dependent rect. 10 1
249 537.94 humidity 60 43200 > th dose independent rect. 19 8
258 538.37 humidity 70 43200 > th dose independent rect. 20 5
361 541.17 humidity 70 43200 < th dose dependent rect. 19 7
368 541.39 temperature 15 43200 < th dose dependent sin 10 NA
388 541.79 wind 7 43200 > th dose independent rect. 5 1
406 542.28 humidity 90 43200 < th dose independent rect. 9 2
443 542.98 radiation 1 43200 < th dose independent rect. 18 6
446 543.00 radiation 1 43200 < th dose independent rect. 18 4
447 543.02 radiation 1 43200 < th dose independent rect. 18 10
448 543.03 radiation 1 43200 < th dose independent rect. 18 8
450 543.06 radiation 1 43200 < th dose independent rect. 18 1
461 543.20 radiation 1 43200 > th dose independent rect. 8 4
462 543.23 radiation 1 43200 < th dose independent rect. 8 4
466 543.28 radiation 1 43200 < th dose dependent rect. 9 3
494 543.75 wind 7 43200 < th dose independent rect. 5 1
496 543.77 radiation 1 14400 < th dose dependent rect. 5 2
527 544.11 humidity 70 43200 < th dose dependent rect. 20 1
544 544.35 temperature 15 43200 > th dose independent sin 11 NA
584 544.79 temperature 15 43200 > th dose independent rect. 22 14
609 545.03 humidity 80 43200 > th dose independent rect. 10 1
614 545.06 temperature 15 43200 < th dose independent sin 11 NA
628 545.16 radiation 1 43200 > th dose independent rect. 18 1
653 545.33 temperature 15 43200 < th dose independent rect. 22 14
748 545.99 radiation 1 43200 < th dose dependent rect. 18 18
772 546.17 radiation 1 43200 < th dose dependent rect. 21 15
775 546.18 radiation 1 43200 < th dose dependent rect. 1 11
776 546.18 radiation 1 43200 < th dose dependent rect. 23 13
778 546.19 radiation 1 43200 < th dose dependent rect. 4 8
814 546.51 radiation 1 14400 < th dose dependent rect. 3 4
854 546.73 temperature 15 43200 > th dose independent rect. 10 19
865 546.78 temperature 20 43200 < th dose independent rect. 16 16
927 547.00 radiation 20 43200 > th dose dependent rect. 6 1
942 547.01 radiation 1 14400 < th dose dependent rect. 21 10