Os03g0134300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP phosphoribosyl transferase.
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Os03g0134300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP phosphoribosyl transferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.9 | 0.278 | 13.5 | -1.45 | 0.813 | 0.841 | -0.251 | 0.347 | -0.607 | 16.3 | 2.008 | 106 | -- | -- |
| 35.1 | 0.276 | 13.5 | -1.45 | 0.816 | 0.827 | -0.111 | -- | -0.608 | 16.3 | 1.864 | 106 | -- | -- |
| 35.04 | 0.276 | 13.5 | -1.45 | 0.813 | 0.841 | -- | 0.225 | -0.605 | 16.3 | 2.141 | 105 | -- | -- |
| 35.13 | 0.276 | 13.5 | -1.45 | 0.816 | 0.826 | -- | -- | -0.608 | 16.3 | 1.928 | 106 | -- | -- |
| 53.37 | 0.34 | 13.5 | -1.5 | -- | 1.34 | -- | 0.194 | -0.667 | -- | -5.42 | 228 | -- | -- |
| 43.87 | 0.31 | 13.5 | -1.44 | 1.16 | -- | -0.0949 | -- | -0.565 | 15.1 | -- | -- | -- | -- |
| 43.9 | 0.31 | 13.5 | -1.44 | 1.16 | -- | -- | -- | -0.565 | 15.1 | -- | -- | -- | -- |
| 53.45 | 0.341 | 13.5 | -1.5 | -- | 1.34 | -- | -- | -0.668 | -- | -8.816 | 230 | -- | -- |
| 90.42 | 0.443 | 13.5 | -- | 0.855 | 0.797 | -- | -- | -0.445 | 16.2 | 2.31 | 103 | -- | -- |
| 121.13 | 0.514 | 13.5 | -1.49 | -- | -- | -- | -- | -0.596 | -- | -- | -- | -- | -- |
| 98.78 | 0.465 | 13.5 | -- | 1.19 | -- | -- | -- | -0.405 | 15.1 | -- | -- | -- | -- |
| 112.87 | 0.495 | 13.5 | -- | -- | 1.34 | -- | -- | -0.495 | -- | -10.66 | 206 | -- | -- |
| 179.9 | 0.626 | 13.5 | -- | -- | -- | -- | -- | -0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.62 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 7 | 31.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 10 | 31.49 | radiation | 10.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 12 | 31.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 13 | 31.56 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 24 | 31.71 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 25 | 31.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 32 | 31.87 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 40 | 31.92 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 48 | 32.00 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 67 | 32.10 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 76 | 32.23 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 111 | 32.51 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 123 | 32.58 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 126 | 32.58 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 133 | 32.63 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 141 | 32.67 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 148 | 32.72 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 151 | 32.74 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 165 | 32.77 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 176 | 32.81 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 178 | 32.82 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 181 | 32.83 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 182 | 32.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 203 | 32.95 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 222 | 32.99 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 230 | 33.03 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 249 | 33.10 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 256 | 33.12 | humidity | 70.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 260 | 33.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 264 | 33.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 293 | 33.25 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 302 | 33.27 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 312 | 33.31 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 320 | 33.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 321 | 33.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 394 | 33.49 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 402 | 33.51 | radiation | 10.0 | 270 | < th | dose independent | sin | 5 | NA |
| 408 | 33.52 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 431 | 33.58 | radiation | 1.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 447 | 33.62 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 448 | 33.63 | radiation | 10.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 481 | 33.69 | radiation | 20.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 492 | 33.72 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 496 | 33.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 526 | 33.79 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 527 | 33.79 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 530 | 33.80 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 568 | 33.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 580 | 33.86 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 589 | 33.88 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 597 | 33.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 598 | 33.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 603 | 33.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 641 | 33.97 | radiation | 1.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 642 | 33.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 672 | 34.00 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 673 | 34.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 691 | 34.03 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 733 | 34.07 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 739 | 34.08 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 745 | 34.08 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 793 | 34.15 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 794 | 34.15 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 795 | 34.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 801 | 34.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 802 | 34.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 839 | 34.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 840 | 34.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 846 | 34.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 895 | 34.23 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 909 | 34.24 | radiation | 10.0 | 90 | > th | dose independent | sin | 1 | NA |
| 924 | 34.25 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 974 | 34.31 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 6 |