FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0133800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0194) R2 : 0.288
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.89 (0.363) R2dE : 0.287 R2E : 0.286
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0414 (0.0408) R2dN8 : 0.00227 R2N8 : 0.000829
σ : 0.364
deviance : 60.97
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 70.65
memory length : 194
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.69
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.53 0.359 3.13 -0.171 0.0476 3.63 0.191 -14.1 0.0424 9.97 80.16 83 5.12 1.95
60.69 0.363 3.12 -0.119 0.0502 4.56 0.289 -- 0.0285 9.93 69.01 195 5.67 1.08
58.6 0.357 3.13 -0.166 0.0595 3.59 -- -13.9 0.0412 7.75 80.2 83 5.13 1.95
60.72 0.363 3.12 -0.0862 0.0508 4.8 -- -- 0.0285 9.31 69 195 5.67 1.08
58.8 0.357 3.13 -0.165 -- 3.64 -- -13.9 0.0429 -- 80.19 83 5.13 1.95
83.28 0.428 3.13 -0.185 0.117 -- -0.538 -- 0.00652 6.01 -- -- -- --
83.87 0.429 3.13 -0.188 0.123 -- -- -- 0.00916 7.4 -- -- -- --
60.91 0.363 3.12 -0.0864 -- 4.79 -- -- 0.0325 -- 69.49 195 5.68 1.09
60.88 0.363 3.12 -- 0.0508 4.81 -- -- 0.0285 8.46 69 195 5.67 1.08
84.67 0.43 3.13 -0.186 -- -- -- -- 0.0112 -- -- -- -- --
84.8 0.431 3.12 -- 0.121 -- -- -- 0.0301 7.51 -- -- -- --
60.97 0.364 3.13 -- -- 4.89 -- -- 0.0414 -- 70.65 194 5.69 1.1
85.59 0.432 3.13 -- -- -- -- -- 0.0318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.04 humidity 80 10 < th dose dependent rect. 20 12
2 60.08 humidity 80 90 < th dose dependent rect. 21 11
3 60.09 humidity 80 90 < th dose independent rect. 5 2
11 60.39 humidity 80 90 < th dose dependent rect. 6 1
12 60.41 humidity 80 90 < th dose dependent rect. 5 3
14 60.44 humidity 80 90 < th dose dependent rect. 2 6
20 60.48 humidity 70 90 < th dose dependent rect. 18 14
27 60.55 humidity 80 90 < th dose independent rect. 24 7
28 60.55 humidity 70 30 < th dose independent rect. 18 14
32 60.56 radiation 20 90 > th dose independent rect. 6 1
48 60.56 radiation 20 90 > th dose dependent rect. 6 1
164 60.73 humidity 70 10 < th dose independent rect. 7 1
666 65.18 atmosphere 1005 30 > th dose dependent rect. 7 1
734 66.90 radiation 30 30 < th dose independent sin 11 NA
761 67.31 radiation 1 270 > th dose independent rect. 4 1
783 67.37 humidity 80 720 < th dose dependent rect. 21 11
786 67.47 humidity 90 720 < th dose dependent rect. 1 6
787 67.48 humidity 90 720 < th dose dependent rect. 3 2
825 67.85 humidity 80 1440 > th dose independent rect. 2 5
829 67.93 humidity 80 1440 > th dose independent rect. 24 7
914 69.00 humidity 80 1440 > th dose independent rect. 5 1
939 69.15 humidity 70 1440 > th dose independent rect. 7 1
952 69.24 humidity 70 1440 > th dose independent rect. 21 11
973 69.29 humidity 70 1440 > th dose independent rect. 5 3