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Os03g0133600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.18 (0.0364) R2 : 0.473
β1 : -1.4 (0.135) R2dD : 0.149 R2D : 0.193
β2 : 2.15 (0.148) R2dC : 0.737 R2C : -0.349
β3 : 3.23 (0.237) R2dE : 0.614 R2E : -0.403
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0642 (0.0789) R2dN8 : 0.000493 R2N8 : -0.00113
σ : 0.679
deviance : 212.58
__
_____
C
peak time of C : 22.7
E
wheather : radiation
threshold : 1.21
memory length : 1071
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.74 0.671 8.25 -2.11 1.2 2.83 -1.11 5.95 -0.199 2.26 0.5676 1419 -- --
204.78 0.666 8.17 -1.73 1.57 1.95 -1.89 -- -0.186 0.319 1.76 1169 -- --
204.6 0.666 8.19 -1.76 1.31 3.07 -- 5.83 -0.122 1.92 0.1701 1396 -- --
212.58 0.679 8.18 -1.4 2.15 3.23 -- -- -0.0642 22.7 1.21 1071 -- --
247.11 0.732 8.27 -1.84 -- 3.14 -- 6.04 -0.213 -- 0.009997 7715 -- --
241.31 0.728 8.19 -1.91 1.05 -- -1.58 -- -0.303 2.38 -- -- -- --
249.65 0.74 8.19 -1.87 1.07 -- -- -- -0.295 2.79 -- -- -- --
236.68 0.717 8.12 -1.23 -- 3.39 -- -- 0.201 -- 1.937 1634 -- --
266.97 0.761 8.12 -- 2.39 3.7 -- -- 0.128 22.7 0.95 1113 -- --
315.41 0.83 8.18 -1.82 -- -- -- -- -0.268 -- -- -- -- --
341.76 0.865 8.14 -- 1.03 -- -- -- -0.0868 2.78 -- -- -- --
272.87 0.769 8.09 -- -- 2.91 -- -- 0.159 -- 0.7829 1646 -- --
403.17 0.937 8.14 -- -- -- -- -- -0.0654 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.35 radiation 1.0 14400 < th dose dependent rect. 19 10
2 193.46 radiation 1.0 14400 < th dose dependent rect. 23 6
6 194.28 temperature 30.0 720 < th dose independent rect. 18 1
7 194.81 wind 7.0 14400 > th dose independent rect. 12 1
8 194.97 wind 7.0 14400 < th dose independent rect. 11 2
12 196.22 temperature 30.0 720 < th dose independent rect. 17 12
15 196.79 radiation 1.0 720 < th dose dependent rect. 3 16
16 197.19 temperature 30.0 720 < th dose independent rect. 17 3
18 197.55 wind 7.0 14400 > th dose dependent rect. 11 2
25 198.90 wind 9.0 14400 > th dose independent rect. 4 10
32 199.07 wind 7.0 14400 > th dose dependent rect. 4 9
36 199.20 wind 9.0 14400 > th dose independent rect. 6 8
41 199.29 radiation 1.0 1440 < th dose dependent rect. 18 11
44 199.37 wind 7.0 14400 < th dose independent rect. 4 9
46 199.41 radiation 1.0 720 > th dose independent sin 12 NA
48 199.48 wind 9.0 14400 < th dose independent rect. 7 7
50 199.57 radiation 1.0 1440 < th dose dependent rect. 18 3
56 199.68 radiation 1.0 720 < th dose independent rect. 1 18
57 199.74 humidity 70.0 720 > th dose independent rect. 18 2
64 199.91 radiation 1.0 720 > th dose independent rect. 13 18
73 200.09 wind 9.0 14400 < th dose independent rect. 2 12
76 200.13 radiation 20.0 14400 > th dose independent rect. 16 15
78 200.15 humidity 50.0 720 > th dose dependent rect. 18 2
83 200.20 radiation 1.0 1440 < th dose dependent rect. 18 23
101 200.56 humidity 70.0 720 > th dose independent rect. 18 11
109 200.89 wind 9.0 14400 < th dose independent rect. 23 15
117 201.10 precipitation 0.1 14400 > th dose dependent rect. 5 1
121 201.17 precipitation 0.1 14400 > th dose independent rect. 5 1
122 201.20 wind 9.0 14400 > th dose independent sin 5 NA
123 201.20 wind 7.0 14400 > th dose dependent rect. 24 13
125 201.21 radiation 1.0 720 < th dose dependent sin 0 NA
129 201.26 radiation 20.0 14400 > th dose independent rect. 16 2
145 201.30 wind 1.0 43200 < th dose independent rect. 19 9
159 201.50 precipitation 0.1 14400 < th dose independent rect. 5 1
160 201.50 precipitation 0.1 14400 < th dose dependent rect. 5 1
182 201.64 radiation 1.0 14400 < th dose dependent rect. 3 2
196 201.78 humidity 80.0 14400 > th dose independent rect. 3 2
228 202.18 radiation 20.0 14400 > th dose dependent rect. 16 1
248 202.24 humidity 80.0 14400 < th dose independent rect. 3 1
255 202.31 wind 9.0 14400 < th dose independent sin 5 NA
266 202.43 humidity 80.0 14400 < th dose independent rect. 22 9
276 202.49 humidity 80.0 14400 < th dose independent rect. 22 6
284 202.52 wind 1.0 43200 < th dose dependent rect. 18 10
298 202.62 humidity 80.0 14400 > th dose independent rect. 22 7
319 202.86 humidity 80.0 14400 > th dose independent rect. 22 9
323 202.88 humidity 90.0 14400 < th dose dependent rect. 2 4
336 202.98 wind 1.0 43200 > th dose independent rect. 18 10
340 203.07 humidity 80.0 14400 < th dose independent rect. 22 3
355 203.24 humidity 70.0 14400 < th dose independent rect. 18 1
360 203.33 radiation 1.0 720 < th dose dependent rect. 17 13
408 203.67 radiation 1.0 720 < th dose dependent sin 12 NA
432 203.92 humidity 80.0 14400 < th dose dependent rect. 22 2
441 204.02 atmosphere 1005.0 14400 > th dose independent rect. 16 1
469 204.24 humidity 90.0 14400 > th dose dependent rect. 12 18
476 204.30 wind 1.0 43200 < th dose dependent rect. 20 8
491 204.40 humidity 80.0 14400 < th dose dependent rect. 22 6
503 204.49 humidity 90.0 14400 > th dose dependent rect. 24 21
508 204.52 wind 3.0 43200 < th dose independent rect. 2 2
511 204.56 atmosphere 1005.0 43200 < th dose independent rect. 11 3
520 204.62 atmosphere 1005.0 43200 > th dose independent rect. 11 3
523 204.63 radiation 1.0 720 > th dose independent rect. 11 21
534 204.69 radiation 10.0 14400 < th dose dependent rect. 18 1
540 204.71 radiation 1.0 720 < th dose independent rect. 16 15
555 204.77 radiation 1.0 720 < th dose independent rect. 23 21
558 204.77 radiation 10.0 14400 < th dose dependent rect. 18 6
565 204.79 wind 9.0 14400 > th dose dependent sin 4 NA
583 204.86 radiation 1.0 720 < th dose independent sin 12 NA
593 204.91 atmosphere 1005.0 43200 < th dose independent rect. 16 8
597 204.92 wind 1.0 43200 < th dose dependent sin 14 NA
603 204.97 atmosphere 1005.0 43200 > th dose independent rect. 19 1
610 205.02 atmosphere 1005.0 43200 < th dose independent rect. 13 1
614 205.03 atmosphere 1005.0 43200 < th dose independent rect. 11 13
616 205.04 atmosphere 1005.0 14400 < th dose independent rect. 16 1
622 205.06 humidity 90.0 14400 > th dose independent rect. 12 19
632 205.10 wind 3.0 43200 < th dose dependent rect. 1 3
641 205.14 radiation 30.0 14400 < th dose independent rect. 15 1
651 205.19 humidity 90.0 14400 > th dose independent rect. 15 16
669 205.26 humidity 80.0 14400 < th dose dependent rect. 3 1
684 205.32 atmosphere 1005.0 43200 < th dose independent rect. 18 4
696 205.35 wind 3.0 43200 < th dose independent rect. 24 4
711 205.40 radiation 1.0 720 < th dose independent sin 1 NA
715 205.41 atmosphere 1005.0 43200 < th dose independent rect. 10 7
728 205.46 atmosphere 1005.0 43200 > th dose independent rect. 10 7
755 205.53 humidity 90.0 14400 > th dose dependent sin 11 NA
769 205.55 radiation 30.0 14400 < th dose independent rect. 15 12
798 205.61 radiation 1.0 14400 < th dose independent rect. 18 3
803 205.62 radiation 1.0 14400 < th dose independent rect. 18 11
829 205.65 radiation 1.0 14400 > th dose independent rect. 18 11
857 205.72 radiation 1.0 14400 > th dose independent rect. 18 1
878 205.77 atmosphere 1005.0 43200 < th dose independent sin 17 NA
879 205.77 wind 3.0 43200 > th dose independent rect. 2 2
884 205.78 radiation 1.0 14400 < th dose independent rect. 18 9
915 205.85 atmosphere 1005.0 43200 > th dose independent rect. 10 13