Os03g0133500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.
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Os03g0133500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.81 | 0.508 | 6.8 | 0.372 | 0.85 | 1.05 | -0.953 | -0.188 | 0.345 | 3.77 | 21.5 | 845 | -- | -- |
| 116.9 | 0.504 | 6.79 | 0.415 | 0.855 | 1.05 | -0.96 | -- | 0.354 | 3.72 | 21.5 | 824 | -- | -- |
| 119.49 | 0.509 | 6.8 | 0.365 | 0.846 | 1.06 | -- | -0.246 | 0.341 | 3.76 | 21.43 | 843 | -- | -- |
| 119.67 | 0.509 | 6.79 | 0.433 | 0.847 | 1.07 | -- | -- | 0.361 | 3.77 | 21.41 | 831 | -- | -- |
| 156.54 | 0.583 | 6.81 | 0.312 | -- | 1.16 | -- | -0.357 | 0.325 | -- | 21.44 | 978 | -- | -- |
| 155.96 | 0.585 | 6.73 | 0.81 | 0.9 | -- | -1.03 | -- | 0.657 | 3 | -- | -- | -- | -- |
| 159.51 | 0.591 | 6.73 | 0.833 | 0.894 | -- | -- | -- | 0.663 | 2.93 | -- | -- | -- | -- |
| 156.88 | 0.583 | 6.8 | 0.408 | -- | 1.18 | -- | -- | 0.348 | -- | 21.42 | 969 | -- | -- |
| 124.23 | 0.519 | 6.8 | -- | 0.843 | 1.22 | -- | -- | 0.296 | 3.79 | 21.28 | 871 | -- | -- |
| 205.53 | 0.67 | 6.72 | 0.871 | -- | -- | -- | -- | 0.686 | -- | -- | -- | -- | -- |
| 177.79 | 0.624 | 6.75 | -- | 0.91 | -- | -- | -- | 0.57 | 2.93 | -- | -- | -- | -- |
| 160.76 | 0.591 | 6.81 | -- | -- | 1.3 | -- | -- | 0.278 | -- | 21.45 | 993 | -- | -- |
| 225.54 | 0.701 | 6.74 | -- | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 3 | 114.67 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 4 | 114.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 14 |
| 6 | 114.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 9 | 114.85 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 41 | 115.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 62 | 116.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 75 | 116.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 122 | 116.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 135 | 116.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 166 | 117.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 235 | 117.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 376 | 118.81 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 378 | 118.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 473 | 119.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 487 | 119.31 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 506 | 119.37 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 510 | 119.38 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 565 | 119.62 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 570 | 119.67 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 575 | 119.69 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 17 |
| 576 | 119.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 622 | 119.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 626 | 119.87 | temperature | 15 | 1440 | > th | dose dependent | sin | 16 | NA |
| 641 | 119.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 650 | 119.94 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 13 |
| 657 | 119.96 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 671 | 120.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 674 | 120.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 698 | 120.07 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 732 | 120.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 736 | 120.17 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 776 | 120.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 817 | 120.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 827 | 120.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 849 | 120.44 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 861 | 120.48 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 874 | 120.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 947 | 120.67 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |