Os03g0133000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC-domain protein 14.
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Os03g0133000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC-domain protein 14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.22 | 0.522 | 11.2 | 1.74 | 0.466 | 1.67 | 0.496 | 2.2 | 0.502 | 0.815 | 1.059 | 14465 | -- | -- |
| 138.27 | 0.548 | 11.2 | 1.68 | 0.696 | 1.57 | 0.799 | -- | 0.5 | 0.821 | 1.245 | 14788 | -- | -- |
| 124.22 | 0.519 | 11.2 | 1.73 | 0.459 | 1.67 | -- | 2.22 | 0.502 | 0.892 | 1.05 | 14455 | -- | -- |
| 135.16 | 0.541 | 11.2 | 1.56 | 0.737 | 1.41 | -- | -- | 0.503 | 0.657 | 1.259 | 16129 | -- | -- |
| 129.02 | 0.529 | 11.2 | 1.73 | -- | 1.73 | -- | 2.32 | 0.476 | -- | 1.06 | 15647 | -- | -- |
| 173.69 | 0.618 | 11.2 | 1.76 | 0.462 | -- | 0.497 | -- | 0.801 | 1.02 | -- | -- | -- | -- |
| 174.66 | 0.619 | 11.2 | 1.75 | 0.464 | -- | -- | -- | 0.797 | 1.31 | -- | -- | -- | -- |
| 137.38 | 0.546 | 11.2 | 1.2 | -- | 1.56 | -- | -- | 0.433 | -- | 1.25 | 15660 | -- | -- |
| 119.85 | 0.51 | 11.4 | -- | 0.415 | 1.87 | -- | -- | -0.039 | 1.34 | 0.86 | 47520 | -- | -- |
| 187.94 | 0.641 | 11.2 | 1.76 | -- | -- | -- | -- | 0.807 | -- | -- | -- | -- | -- |
| 254.94 | 0.747 | 11.2 | -- | 0.494 | -- | -- | -- | 0.603 | 1.44 | -- | -- | -- | -- |
| 130.91 | 0.533 | 11.4 | -- | -- | 1.9 | -- | -- | -0.044 | -- | 0.87 | 47520 | -- | -- |
| 269.97 | 0.767 | 11.2 | -- | -- | -- | -- | -- | 0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.32 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 2 | 116.35 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 3 | 116.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 4 | 116.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 5 | 116.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 9 | 116.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 18 | 117.21 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 21 | 117.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 25 | 117.31 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 29 | 117.38 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 51 | 117.82 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 62 | 117.85 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 63 | 117.85 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 66 | 117.86 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 73 | 117.89 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 81 | 117.98 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 99 | 118.11 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 102 | 118.13 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 106 | 118.15 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 119 | 118.19 | radiation | 1.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 124 | 118.20 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 128 | 118.21 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 130 | 118.22 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 150 | 118.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 165 | 118.34 | radiation | 1.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 167 | 118.34 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 21 |
| 235 | 118.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 240 | 118.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 248 | 118.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 437 | 118.84 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |
| 438 | 118.84 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 1 | 19 |
| 443 | 118.84 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 22 | 21 |
| 449 | 118.84 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 22 |
| 465 | 118.85 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 499 | 118.87 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 13 |
| 566 | 118.95 | radiation | 1.0 | 43200 | > th | dose independent | no | NA | NA |
| 567 | 118.95 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 570 | 118.95 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 649 | 118.99 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 661 | 119.00 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 689 | 119.04 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 694 | 119.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 20 |
| 697 | 119.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 22 |
| 747 | 119.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 899 | 119.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 11 |
| 923 | 119.34 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 927 | 119.37 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 971 | 119.47 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 974 | 119.48 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 995 | 119.55 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |