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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0132800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to protein kinase-like protein [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.87 (0.0173) R2 : 0.626
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.05 (0.0414) R2dC : 0.526 R2C : 0.506
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.388 (0.0365) R2dN8 : 0.12 R2N8 : 0.0997
σ : 0.327
deviance : 48.85
__
_____
C
peak time of C : 0.826
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.47 0.299 9.85 -0.042 0.438 0.594 0.246 0.317 0.42 2.6 5.602 10 -- --
40.67 0.297 9.85 -0.03 0.462 0.563 0.573 -- 0.42 2.22 5.634 9 -- --
40.55 0.297 9.85 -0.0482 0.436 0.601 -- 0.447 0.418 2.7 5.681 9 -- --
41.76 0.301 9.85 -0.0541 0.422 0.62 -- -- 0.418 2.87 5.962 9 -- --
43.23 0.306 9.85 -0.0396 -- 0.863 -- 0.438 0.442 -- 3.43 96 -- --
47.11 0.322 9.87 -0.0328 1.05 -- 0.626 -- 0.386 0.795 -- -- -- --
48.77 0.327 9.88 -0.0562 1.05 -- -- -- 0.382 0.829 -- -- -- --
44.64 0.311 9.85 -0.0243 -- 0.86 -- -- 0.45 -- 3.466 97 -- --
41.82 0.301 9.85 -- 0.417 0.627 -- -- 0.426 2.92 5.96 9 -- --
117.44 0.506 9.86 -0.0179 -- -- -- -- 0.402 -- -- -- -- --
48.85 0.327 9.87 -- 1.05 -- -- -- 0.388 0.826 -- -- -- --
44.65 0.311 9.85 -- -- 0.865 -- -- 0.448 -- 3.46 107 -- --
117.45 0.506 9.86 -- -- -- -- -- 0.404 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.12 wind 1.0 10 > th dose dependent rect. 4 1
2 37.68 wind 1.0 10 > th dose independent rect. 4 1
4 38.38 temperature 25.0 90 > th dose independent rect. 2 3
5 38.51 temperature 25.0 30 > th dose independent rect. 4 1
8 38.61 temperature 25.0 90 > th dose dependent rect. 4 1
10 38.69 humidity 90.0 10 < th dose independent rect. 4 1
14 38.83 temperature 20.0 10 > th dose dependent rect. 1 4
16 39.01 temperature 25.0 90 > th dose dependent rect. 2 3
21 39.39 temperature 20.0 10 > th dose independent rect. 2 3
22 39.40 temperature 20.0 30 > th dose independent rect. 11 18
28 39.57 wind 7.0 1440 < th dose independent rect. 5 1
30 39.57 temperature 10.0 1440 > th dose independent rect. 5 1
33 39.57 temperature 30.0 1440 < th dose independent rect. 5 1
37 39.57 humidity 50.0 1440 > th dose independent rect. 5 1
46 39.57 atmosphere 995.0 1440 > th dose independent rect. 5 1
47 39.57 atmosphere 1015.0 1440 < th dose independent rect. 5 1
48 39.57 radiation 20.0 1440 < th dose independent rect. 5 1
57 39.57 temperature 10.0 1440 > th dose independent rect. 6 23
64 39.64 temperature 20.0 30 > th dose independent rect. 17 12
75 39.81 atmosphere 1005.0 10 > th dose dependent rect. 4 1
78 39.87 radiation 1.0 30 < th dose independent sin 3 NA
81 39.88 radiation 10.0 10 < th dose dependent sin 6 NA
99 40.04 precipitation 0.1 10 < th dose independent rect. 4 1
101 40.04 precipitation 0.1 10 < th dose dependent rect. 4 1
108 40.09 radiation 1.0 30 > th dose independent sin 3 NA
110 40.09 atmosphere 1000.0 10 > th dose independent rect. 5 23
112 40.11 atmosphere 1015.0 10 < th dose dependent rect. 4 1
118 40.15 humidity 90.0 90 < th dose dependent rect. 4 1
119 40.16 wind 9.0 10 < th dose independent rect. 4 1
120 40.16 temperature 10.0 10 > th dose independent rect. 4 1
122 40.16 temperature 30.0 10 < th dose independent rect. 4 1
123 40.16 humidity 50.0 10 > th dose independent rect. 4 1
126 40.16 atmosphere 995.0 10 > th dose independent rect. 4 1
128 40.16 atmosphere 1010.0 10 < th dose independent rect. 4 1
130 40.16 radiation 1.0 10 < th dose independent rect. 4 1
135 40.16 temperature 10.0 10 > th dose independent rect. 5 23
136 40.16 radiation 10.0 10 < th dose dependent rect. 4 1
144 40.21 temperature 20.0 30 > th dose independent rect. 19 10
145 40.21 humidity 50.0 10 > th dose dependent rect. 4 1
146 40.21 atmosphere 995.0 10 > th dose dependent rect. 4 1
149 40.24 wind 3.0 10 < th dose independent rect. 4 1
154 40.26 wind 3.0 10 < th dose dependent rect. 4 1
161 40.33 temperature 20.0 30 > th dose independent rect. 15 14
173 40.37 wind 9.0 10 < th dose dependent rect. 4 1
215 40.42 wind 9.0 10 < th dose independent rect. 5 23
222 40.45 temperature 30.0 30 < th dose dependent rect. 4 1
231 40.48 humidity 80.0 1440 < th dose independent rect. 1 13
237 40.51 humidity 80.0 1440 > th dose independent rect. 1 13
239 40.51 humidity 70.0 1440 > th dose dependent rect. 11 1
240 40.51 atmosphere 1005.0 90 > th dose dependent rect. 2 3
254 40.59 humidity 80.0 1440 < th dose independent sin 4 NA
258 40.60 humidity 80.0 1440 > th dose independent sin 4 NA
263 40.61 temperature 20.0 30 > th dose independent rect. 13 16
277 40.68 temperature 20.0 30 > th dose independent rect. 21 8
290 40.73 atmosphere 1005.0 270 > th dose dependent rect. 24 4
310 40.77 humidity 90.0 10 < th dose dependent rect. 4 1
312 40.78 wind 1.0 43200 > th dose independent rect. 23 7
332 40.80 radiation 10.0 10 < th dose dependent rect. 2 13
360 40.90 wind 1.0 43200 > th dose independent rect. 21 9
368 40.93 radiation 1.0 30 < th dose independent rect. 2 12
370 40.93 radiation 1.0 30 < th dose independent rect. 2 16
373 40.94 precipitation 0.1 720 < th dose independent rect. 3 14
374 40.94 precipitation 0.1 720 < th dose dependent rect. 3 14
382 40.97 precipitation 0.1 720 < th dose independent rect. 18 23
385 40.97 precipitation 0.1 720 < th dose dependent rect. 18 23
386 40.98 humidity 70.0 1440 > th dose dependent rect. 10 3
391 40.99 humidity 70.0 1440 > th dose dependent rect. 3 11
397 41.00 humidity 70.0 1440 > th dose dependent rect. 2 13
413 41.03 wind 3.0 43200 < th dose dependent rect. 4 2
416 41.05 radiation 1.0 30 < th dose independent rect. 2 10
427 41.07 wind 1.0 43200 > th dose independent rect. 5 1
442 41.10 wind 1.0 30 > th dose independent rect. 2 3
450 41.11 radiation 1.0 30 < th dose independent rect. 2 6
460 41.12 radiation 10.0 10 < th dose dependent rect. 17 23
481 41.17 radiation 1.0 30 < th dose dependent rect. 2 16
493 41.20 humidity 80.0 1440 > th dose independent rect. 11 1
496 41.21 humidity 80.0 1440 < th dose independent rect. 11 1
498 41.21 wind 1.0 43200 < th dose independent rect. 23 7
506 41.22 precipitation 0.1 10 < th dose independent rect. 5 23
507 41.22 humidity 70.0 1440 > th dose dependent sin 3 NA
509 41.22 precipitation 0.1 10 < th dose dependent rect. 5 23
526 41.26 precipitation 0.1 14400 > th dose independent rect. 17 1
548 41.29 precipitation 0.1 14400 > th dose dependent rect. 17 1
549 41.29 humidity 70.0 1440 > th dose dependent rect. 9 5
574 41.33 humidity 80.0 1440 < th dose independent rect. 10 3
610 41.37 radiation 10.0 10 < th dose dependent rect. 2 10
658 41.43 radiation 10.0 10 < th dose dependent rect. 24 15
662 41.44 radiation 1.0 30 > th dose independent rect. 5 13
683 41.45 humidity 90.0 1440 < th dose dependent rect. 23 14
690 41.46 radiation 1.0 30 < th dose independent rect. 19 23
693 41.46 radiation 1.0 30 < th dose dependent rect. 2 6
703 41.47 wind 1.0 43200 > th dose independent rect. 16 14
732 41.50 radiation 10.0 10 < th dose dependent rect. 17 21
736 41.51 humidity 90.0 1440 < th dose dependent sin 6 NA
737 41.51 wind 3.0 43200 < th dose dependent rect. 23 7
756 41.53 humidity 80.0 10 > th dose independent rect. 2 3
757 41.53 humidity 80.0 1440 > th dose independent rect. 10 3
764 41.53 precipitation 0.1 30 < th dose independent rect. 5 21
765 41.53 radiation 1.0 30 < th dose independent rect. 16 22
773 41.53 precipitation 0.1 30 < th dose dependent rect. 5 21
774 41.54 radiation 1.0 30 > th dose independent no NA NA
805 41.54 wind 9.0 10 < th dose independent rect. 5 21
833 41.54 radiation 1.0 30 < th dose independent rect. 7 23
842 41.55 radiation 1.0 30 < th dose independent no NA NA
843 41.55 atmosphere 1000.0 10 > th dose independent rect. 2 3
846 41.55 radiation 1.0 30 < th dose independent rect. 11 21
854 41.55 radiation 1.0 30 < th dose independent rect. 13 23
865 41.57 radiation 1.0 30 > th dose independent rect. 16 23
891 41.59 radiation 1.0 30 < th dose independent rect. 13 19
915 41.62 precipitation 0.1 14400 < th dose independent rect. 17 1
917 41.62 radiation 1.0 10 < th dose independent rect. 2 4
922 41.62 precipitation 0.1 14400 < th dose dependent rect. 17 1
953 41.65 radiation 1.0 10 < th dose dependent rect. 2 4
977 41.67 wind 1.0 43200 > th dose dependent rect. 5 1
985 41.68 radiation 1.0 30 < th dose independent rect. 16 16
998 41.69 wind 1.0 43200 < th dose independent rect. 16 14