Os03g0131500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vitamin K epoxide reductase domain containing protein.
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Os03g0131500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Vitamin K epoxide reductase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.01 | 0.225 | 12.3 | 0.599 | 0.459 | -0.128 | 0.673 | 1.34 | -0.0247 | 18.1 | 20.1 | 4597 | -- | -- |
| 24.36 | 0.23 | 12.3 | 0.584 | 0.489 | -0.499 | 0.627 | -- | 0.0283 | 18.1 | 18.7 | 21797 | -- | -- |
| 24.09 | 0.229 | 12.3 | 0.592 | 0.465 | -0.119 | -- | 1.35 | -0.022 | 18.2 | 20.1 | 4739 | -- | -- |
| 24.69 | 0.231 | 12.3 | 0.697 | 0.508 | -0.586 | -- | -- | -0.0179 | 18.2 | 16.89 | 42103 | -- | -- |
| 35.23 | 0.276 | 12.2 | 0.605 | -- | -0.112 | -- | 1.43 | -0.0292 | -- | 20.1 | 4600 | -- | -- |
| 27.73 | 0.247 | 12.3 | 0.166 | 0.464 | -- | 0.64 | -- | -0.176 | 18.1 | -- | -- | -- | -- |
| 28.72 | 0.251 | 12.3 | 0.16 | 0.468 | -- | -- | -- | -0.174 | 18.2 | -- | -- | -- | -- |
| 35.9 | 0.279 | 12.3 | 0.557 | -- | -0.524 | -- | -- | -0.0748 | -- | 15 | 41923 | -- | -- |
| 28.48 | 0.249 | 12.3 | -- | 0.466 | -0.194 | -- | -- | -0.154 | 18.2 | 14.58 | 12195 | -- | -- |
| 40.07 | 0.296 | 12.3 | 0.147 | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
| 29.4 | 0.254 | 12.3 | -- | 0.465 | -- | -- | -- | -0.192 | 18.2 | -- | -- | -- | -- |
| 39.59 | 0.293 | 12.3 | -- | -- | -0.178 | -- | -- | -0.17 | -- | 13.6 | 12848 | -- | -- |
| 40.64 | 0.298 | 12.3 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.05 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 3 | 22.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 4 | 22.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 22.25 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 12 | 22.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 16 | 22.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 22 | 22.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 39 | 22.57 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 48 | 22.60 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 55 | 22.62 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 57 | 22.62 | wind | 1 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 75 | 22.68 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 81 | 22.69 | wind | 3 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 82 | 22.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 115 | 22.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 118 | 22.75 | wind | 3 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 124 | 22.76 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 149 | 22.78 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 159 | 22.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 181 | 22.82 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 183 | 22.82 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 184 | 22.82 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 190 | 22.82 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 199 | 22.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 16 |
| 205 | 22.84 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 226 | 22.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 229 | 22.85 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 240 | 22.86 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 241 | 22.86 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 273 | 22.88 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 336 | 22.91 | radiation | 20 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 362 | 22.93 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 430 | 22.96 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 453 | 22.97 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 476 | 22.98 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 504 | 22.99 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 521 | 23.00 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 542 | 23.00 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 574 | 23.01 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 583 | 23.02 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 619 | 23.02 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 620 | 23.02 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 628 | 23.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 637 | 23.03 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 643 | 23.03 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 691 | 23.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 736 | 23.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 748 | 23.05 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 789 | 23.06 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 21 |
| 792 | 23.07 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 794 | 23.07 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 796 | 23.07 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 817 | 23.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 825 | 23.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 826 | 23.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 828 | 23.07 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 838 | 23.08 | wind | 3 | 43200 | < th | dose independent | sin | 0 | NA |
| 880 | 23.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 885 | 23.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 886 | 23.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 888 | 23.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 902 | 23.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 20 |