Os03g0131000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 induced kinase 1.
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Os03g0131000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 induced kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.57 | 0.424 | 8.19 | -0.135 | 1.08 | 0.295 | 0.81 | -6.88 | 0.241 | 22.4 | 25.17 | 4326 | -- | -- |
| 94.96 | 0.454 | 7.99 | 1.53 | 1.12 | -0.382 | 0.781 | -- | 0.568 | 22.4 | 27.39 | 3858 | -- | -- |
| 84.14 | 0.427 | 8.19 | -0.15 | 1.08 | 0.305 | -- | -6.85 | 0.238 | 22.4 | 25.3 | 4384 | -- | -- |
| 90.76 | 0.444 | 7.92 | 1.44 | 1.11 | -0.432 | -- | -- | 0.675 | 22.2 | 30.7 | 28170 | -- | -- |
| 154.54 | 0.579 | 8.16 | -0.154 | -- | 0.363 | -- | -6.59 | 0.23 | -- | 24.81 | 4361 | -- | -- |
| 100.81 | 0.471 | 7.98 | 1.39 | 1.08 | -- | 0.753 | -- | 0.582 | 22.3 | -- | -- | -- | -- |
| 103.08 | 0.475 | 7.98 | 1.36 | 1.07 | -- | -- | -- | 0.58 | 22.3 | -- | -- | -- | -- |
| 157.02 | 0.584 | 7.87 | 1.74 | -- | -0.813 | -- | -- | 0.969 | -- | 32.3 | 18874 | -- | -- |
| 147.54 | 0.566 | 8 | -- | 1.1 | -0.442 | -- | -- | 0.494 | 22.3 | 35.05 | 13155 | -- | -- |
| 173.09 | 0.615 | 7.96 | 1.38 | -- | -- | -- | -- | 0.583 | -- | -- | -- | -- | -- |
| 152.05 | 0.577 | 8.02 | -- | 1.08 | -- | -- | -- | 0.429 | 22.4 | -- | -- | -- | -- |
| 220.34 | 0.691 | 7.98 | -- | -- | -0.35 | -- | -- | 0.477 | -- | 35.15 | 15703 | -- | -- |
| 223.26 | 0.697 | 7.99 | -- | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.53 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 3 | 72.05 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 72.09 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 5 | 72.13 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 6 | 72.22 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 7 | 72.39 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 9 | 72.72 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 10 | 72.78 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 12 | 72.82 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 15 | 72.92 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 23 | 74.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 24 | 74.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 25 | 74.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 29 | 74.47 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 31 | 74.51 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 37 | 74.67 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 38 | 74.68 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 43 | 74.75 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 86 | 75.46 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 87 | 75.47 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 101 | 75.54 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 109 | 75.60 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 110 | 75.61 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 122 | 75.66 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 134 | 75.77 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 142 | 75.82 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 147 | 75.82 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 152 | 75.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 167 | 75.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 183 | 75.96 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 203 | 76.00 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 14 | 13 |
| 204 | 76.01 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 214 | 76.04 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 218 | 76.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 221 | 76.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 225 | 76.07 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 230 | 76.07 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 254 | 76.11 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 261 | 76.13 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 262 | 76.13 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 366 | 76.26 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 21 | NA |
| 368 | 76.26 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 396 | 76.30 | humidity | 80.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 473 | 76.37 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 15 | NA |
| 477 | 76.37 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 8 | 14 |
| 541 | 76.43 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 701 | 76.55 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 21 | NA |
| 713 | 76.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 717 | 76.56 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 720 | 76.56 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 724 | 76.56 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 730 | 76.57 | temperature | 25.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 731 | 76.57 | temperature | 25.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 734 | 76.57 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 772 | 76.59 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 806 | 76.61 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 864 | 76.63 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 10 | 19 |