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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0130900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0253) R2 : 0.00316
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0639 (0.0532) R2dN8 : 0.00408 R2N8 : 0.00316
σ : 0.476
deviance : 103.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.83 0.404 12.2 0.461 0.405 3.82 -1.34 -6.5 0.0681 13.7 0.8659 285 -- --
75.02 0.403 12.2 0.421 0.344 2.33 -1.54 -- 0.105 13.7 5.331 285 -- --
80.58 0.418 12.2 0.405 0.409 3.79 -- -6.89 0.0638 13.1 1.282 282 -- --
81.04 0.419 12.3 0.357 0.396 1.79 -- -- 0.069 13.3 9.143 295 -- --
90.81 0.444 12.2 0.389 -- 3.66 -- -5.9 0.0574 -- 1.233 285 -- --
86.52 0.436 12.2 0.262 0.422 -- -1.18 -- 0.103 13.7 -- -- -- --
91.46 0.448 12.2 0.222 0.427 -- -- -- 0.0947 12.8 -- -- -- --
90.86 0.444 12.3 0.333 -- 1.9 -- -- 0.06 -- 9.654 295 -- --
83.96 0.427 12.3 -- 0.398 1.63 -- -- 0.0368 13.1 10.01 293 -- --
102.87 0.474 12.2 0.207 -- -- -- -- 0.0869 -- -- -- -- --
92.76 0.451 12.2 -- 0.424 -- -- -- 0.0699 12.8 -- -- -- --
93.68 0.451 12.3 -- -- 1.73 -- -- 0.0267 -- 10.54 295 -- --
103.99 0.476 12.2 -- -- -- -- -- 0.0639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.67 humidity 60.0 720 > th dose dependent rect. 16 5
29 69.59 humidity 70.0 720 > th dose dependent rect. 19 1
37 70.00 radiation 1.0 720 < th dose dependent rect. 14 3
39 70.07 humidity 50.0 720 > th dose dependent sin 18 NA
40 70.09 humidity 70.0 720 > th dose independent rect. 16 5
63 70.56 humidity 70.0 720 > th dose independent rect. 15 13
73 70.75 humidity 70.0 720 > th dose independent rect. 16 10
103 71.06 radiation 1.0 720 < th dose dependent rect. 8 11
117 71.23 humidity 60.0 720 > th dose dependent rect. 9 14
119 71.26 humidity 80.0 720 > th dose independent rect. 10 11
122 71.27 humidity 50.0 720 > th dose dependent rect. 10 16
123 71.28 radiation 1.0 720 < th dose independent rect. 14 13
159 71.48 radiation 1.0 720 < th dose dependent sin 20 NA
242 72.02 radiation 1.0 720 < th dose independent sin 19 NA
254 72.07 radiation 1.0 720 < th dose independent rect. 14 5
267 72.14 humidity 90.0 270 > th dose dependent rect. 17 8
268 72.14 radiation 1.0 720 < th dose dependent rect. 14 13
281 72.22 radiation 1.0 720 < th dose independent rect. 9 10
283 72.23 radiation 1.0 720 < th dose independent rect. 11 8
298 72.29 humidity 90.0 270 > th dose dependent rect. 12 13
316 72.35 humidity 70.0 720 > th dose independent sin 15 NA
320 72.36 precipitation 0.1 270 > th dose independent rect. 16 12
356 72.50 radiation 10.0 720 < th dose dependent rect. 15 11
401 72.69 precipitation 0.1 270 > th dose independent rect. 13 15
405 72.71 humidity 80.0 1440 < th dose independent rect. 6 8
423 72.78 precipitation 0.1 270 > th dose independent sin 13 NA
441 72.84 precipitation 0.1 270 < th dose independent sin 13 NA
444 72.84 precipitation 0.1 270 < th dose dependent sin 13 NA
447 72.85 humidity 90.0 720 < th dose dependent rect. 17 7
454 72.89 wind 3.0 14400 < th dose independent rect. 2 2
508 73.07 humidity 80.0 720 > th dose independent sin 21 NA
550 73.19 precipitation 0.1 270 > th dose independent rect. 19 9
559 73.23 humidity 90.0 270 > th dose dependent sin 19 NA
584 73.29 humidity 80.0 720 < th dose dependent rect. 17 16
594 73.33 wind 3.0 14400 > th dose independent rect. 2 2
643 73.46 humidity 80.0 1440 > th dose independent rect. 6 9
663 73.50 precipitation 0.1 270 > th dose dependent sin 12 NA
678 73.55 humidity 70.0 720 < th dose independent sin 13 NA
689 73.58 humidity 70.0 720 < th dose independent rect. 15 17
759 73.72 humidity 80.0 1440 < th dose independent sin 3 NA
760 73.72 humidity 80.0 14400 < th dose dependent rect. 6 1
815 73.83 humidity 70.0 720 < th dose independent rect. 15 5
867 73.90 precipitation 0.1 270 > th dose independent rect. 23 22
888 73.94 humidity 70.0 720 < th dose independent rect. 17 15
892 73.95 wind 1.0 270 < th dose independent rect. 23 1
895 73.95 precipitation 0.1 270 > th dose independent rect. 16 22
897 73.95 humidity 90.0 720 < th dose dependent sin 14 NA
911 73.99 wind 5.0 14400 < th dose dependent rect. 3 1
938 74.04 humidity 90.0 720 < th dose independent rect. 20 4
957 74.06 humidity 80.0 720 < th dose dependent sin 12 NA
987 74.14 wind 1.0 14400 > th dose dependent rect. 2 2
999 74.16 humidity 80.0 1440 > th dose independent sin 2 NA