Os03g0129800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os03g0129800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.41 | 0.411 | 3.28 | 0.352 | 0.187 | -0.627 | 0.254 | 1.16 | 0.0157 | 9.4 | 1.02 | 7335 | -- | -- |
| 77.78 | 0.411 | 3.29 | 0.212 | 0.189 | -0.814 | 0.46 | -- | 0.012 | 9.34 | 1.009 | 7337 | -- | -- |
| 76.6 | 0.408 | 3.28 | 0.364 | 0.195 | -0.617 | -- | 1.24 | 0.0112 | 9.22 | 1.03 | 7360 | -- | -- |
| 77.82 | 0.411 | 3.28 | 0.218 | 0.135 | -0.728 | -- | -- | 0.0117 | 9.02 | 0.52 | 7224 | -- | -- |
| 77.64 | 0.41 | 3.29 | 0.393 | -- | -0.671 | -- | 1.3 | -0.0016 | -- | 0.81 | 8023 | -- | -- |
| 86.4 | 0.436 | 3.33 | -0.0414 | 0.157 | -- | 0.322 | -- | -0.175 | 8.81 | -- | -- | -- | -- |
| 86.65 | 0.436 | 3.33 | -0.0323 | 0.165 | -- | -- | -- | -0.176 | 7.86 | -- | -- | -- | -- |
| 77.59 | 0.41 | 3.3 | 0.226 | -- | -0.877 | -- | -- | -0.0247 | -- | 0.36 | 8147 | -- | -- |
| 78.58 | 0.413 | 3.28 | -- | 0.193 | -0.688 | -- | -- | -0.0313 | 8.78 | 0.4933 | 7324 | -- | -- |
| 88.13 | 0.439 | 3.34 | -0.0305 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 86.68 | 0.436 | 3.33 | -- | 0.165 | -- | -- | -- | -0.173 | 7.88 | -- | -- | -- | -- |
| 78.61 | 0.413 | 3.3 | -- | -- | -0.773 | -- | -- | -0.0283 | -- | 0.63 | 8185 | -- | -- |
| 88.15 | 0.438 | 3.34 | -- | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 14 |
| 15 | 74.82 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 30 | 74.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 45 | 74.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 72 | 75.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 238 | 75.45 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 265 | 75.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 298 | 75.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 307 | 76.03 | humidity | 90.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 326 | 76.12 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 329 | 76.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 435 | 76.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 455 | 76.60 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 469 | 76.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 485 | 76.72 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 501 | 76.77 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 504 | 76.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 505 | 76.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 14 |
| 506 | 76.78 | temperature | 30.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 507 | 76.78 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 526 | 76.81 | humidity | 90.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 590 | 76.91 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 609 | 76.94 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 681 | 77.04 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 682 | 77.04 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 12 |
| 701 | 77.06 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 725 | 77.09 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 726 | 77.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 730 | 77.09 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 7 |
| 747 | 77.13 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 15 |
| 754 | 77.14 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 760 | 77.15 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 771 | 77.17 | wind | 3.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 778 | 77.19 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 4 |
| 805 | 77.22 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 807 | 77.23 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 827 | 77.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 829 | 77.26 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 853 | 77.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 867 | 77.29 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 868 | 77.30 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 873 | 77.30 | temperature | 10.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 874 | 77.30 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 889 | 77.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 898 | 77.33 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 904 | 77.33 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 907 | 77.34 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 915 | 77.35 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 918 | 77.35 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 925 | 77.35 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 927 | 77.36 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 928 | 77.36 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 941 | 77.38 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 952 | 77.39 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 968 | 77.40 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 970 | 77.40 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 976 | 77.40 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 998 | 77.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 23 |