FiT-DB / Search/ Help/ Sample detail

Os03g0129400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.88 (0.0875) R2 : 0.542
β1 : 3.59 (0.402) R2dD : 0.229 R2D : -0.41
β2 : 2.53 (0.162) R2dC : 0.25 R2C : -0.0796
β3 : -6.24 (0.533) R2dE : 0.448 R2E : -0.569
β4 : 2.18 (0.642) R2dD*C : 0.0118 R2D*C : -0.251
β5 : -22.3 (1.33) R2dD*E : 0.575 R2D*E : -0.0533
γ1 : -0.813 (0.174) R2dN8 : 0.0447 R2N8 : -0.128
σ : 1.25
deviance : 702.87
__
_____
C
peak time of C : 14.1
E
wheather : radiation
threshold : 66.93
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 2.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
702.87 1.25 9.88 3.59 2.53 -6.24 2.18 -22.3 -0.813 14.1 66.93 4320 18 2.03
895.52 1.39 9.12 3.83 2.18 -5.53 1.31 -- -0.668 13.5 87.92 47520 17.7 1.74
720.6 1.25 9.86 3.64 2.52 -6.16 -- -21.8 -0.782 14 64.25 4320 18 2.03
882.94 1.38 9.11 3.44 2.51 -5.01 -- -- -0.671 13.2 161.6 47520 18.2 2.8
1093.07 1.54 9.9 3.02 -- -5.14 -- -20.7 -1.02 -- 49.17 4320 18 2.03
1180.22 1.61 9.11 0.362 2.18 -- 1.19 -- -0.74 13.2 -- -- -- --
1186.09 1.61 9.1 0.404 2.18 -- -- -- -0.734 13.2 -- -- -- --
1176.9 1.6 9.13 2.62 -- -4.19 -- -- -0.737 -- 157.4 47520 18.2 3.09
851.7 1.36 9.23 -- 2.03 -3.26 -- -- -1.08 13.5 61.27 47520 18.6 1.42
1480.24 1.8 9.14 0.32 -- -- -- -- -0.778 -- -- -- -- --
1190.39 1.61 9.11 -- 2.17 -- -- -- -0.779 13.2 -- -- -- --
1028.1 1.49 9.45 -- -- -4.58 -- -- -1.71 -- 26.96 47520 18.8 7.2
1482.94 1.8 9.15 -- -- -- -- -- -0.814 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 650.57 humidity 80.0 43200 > th dose dependent rect. 17 6
7 660.13 humidity 90.0 43200 < th dose independent rect. 19 3
16 663.66 humidity 80.0 43200 < th dose independent rect. 12 8
21 665.03 humidity 90.0 43200 > th dose independent rect. 20 1
25 665.53 humidity 90.0 43200 > th dose independent rect. 19 3
32 667.99 humidity 80.0 43200 > th dose independent rect. 12 8
37 669.06 humidity 80.0 43200 > th dose dependent rect. 4 20
54 670.54 humidity 80.0 43200 > th dose dependent sin 19 NA
192 681.98 humidity 80.0 43200 < th dose independent rect. 16 1
199 682.89 humidity 90.0 43200 < th dose independent rect. 3 21
217 683.93 humidity 90.0 43200 < th dose independent sin 18 NA
234 685.24 precipitation 0.1 43200 > th dose independent rect. 17 2
251 685.98 precipitation 0.1 43200 < th dose independent rect. 17 2
253 685.98 precipitation 0.1 43200 < th dose dependent rect. 17 2
255 686.06 humidity 80.0 43200 > th dose independent sin 21 NA
297 687.65 humidity 80.0 43200 > th dose dependent sin 1 NA
309 688.08 humidity 90.0 43200 > th dose independent rect. 6 20
361 690.30 humidity 90.0 43200 > th dose independent sin 18 NA
373 690.89 radiation 1.0 43200 < th dose independent rect. 17 1
390 691.48 radiation 1.0 43200 > th dose independent rect. 17 1
437 693.49 humidity 90.0 43200 < th dose independent rect. 15 23
455 694.39 humidity 90.0 43200 < th dose independent no NA NA
463 694.52 humidity 90.0 43200 > th dose independent rect. 1 22
464 694.52 precipitation 0.1 43200 > th dose dependent rect. 16 3
503 695.60 humidity 90.0 43200 < th dose independent rect. 11 23
514 695.87 humidity 70.0 43200 > th dose dependent rect. 12 2
518 696.01 humidity 90.0 43200 < th dose independent rect. 18 23
561 697.16 precipitation 0.1 43200 > th dose dependent rect. 17 5
647 699.68 humidity 90.0 43200 > th dose independent rect. 15 23
665 700.40 humidity 90.0 43200 > th dose independent no NA NA
702 701.39 humidity 90.0 43200 > th dose independent rect. 11 23
711 701.56 humidity 90.0 43200 > th dose independent rect. 19 23
712 701.66 humidity 90.0 43200 < th dose independent sin 3 NA
739 702.27 radiation 1.0 43200 < th dose independent rect. 17 13
786 703.41 humidity 90.0 43200 > th dose dependent rect. 6 1
845 705.25 radiation 1.0 43200 < th dose independent rect. 17 15
859 705.76 radiation 1.0 43200 > th dose independent rect. 17 13
866 705.91 humidity 90.0 43200 > th dose dependent rect. 6 3
877 706.25 humidity 90.0 43200 > th dose independent sin 3 NA
908 707.20 radiation 1.0 43200 > th dose independent rect. 17 16
909 707.20 radiation 10.0 14400 < th dose independent rect. 12 19
928 707.67 precipitation 0.1 43200 > th dose dependent rect. 11 8
934 707.77 radiation 1.0 43200 < th dose independent rect. 17 5
944 707.85 precipitation 0.1 43200 > th dose dependent rect. 11 11
945 707.98 radiation 1.0 43200 < th dose independent rect. 17 11
957 708.15 humidity 90.0 43200 < th dose independent rect. 4 7
958 708.16 humidity 90.0 43200 > th dose independent rect. 4 7
980 708.59 radiation 1.0 43200 < th dose independent sin 11 NA
988 708.86 radiation 1.0 43200 < th dose independent rect. 5 4
997 709.00 radiation 1.0 43200 > th dose independent rect. 5 4