FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0129300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.9 (0.0222) R2 : 0.335
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.708 (0.0467) R2dN8 : 0.433 R2N8 : 0.335
σ : 0.418
deviance : 80.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.53 0.324 16.9 -0.614 0.0796 -0.504 -1.15 -0.198 -0.797 20.5 20.35 30 -- --
47.59 0.321 16.9 -0.618 0.0787 -0.511 -1.29 -- -0.798 20.7 20.37 29 -- --
49.77 0.329 16.9 -0.621 0.107 -0.42 -- -0.671 -0.748 16.7 18.64 11 -- --
52.89 0.339 16.9 -0.573 0.0972 -0.478 -- -- -0.781 19.1 18.72 14 -- --
49.99 0.329 16.9 -0.599 -- -0.45 -- -0.79 -0.784 -- 19.15 15 -- --
53.29 0.342 16.9 -0.599 0.477 -- 0.946 -- -0.77 12.1 -- -- -- --
56.79 0.353 16.9 -0.559 0.481 -- -- -- -0.764 12.7 -- -- -- --
53.3 0.34 16.9 -0.578 -- -0.475 -- -- -0.794 -- 22.15 25 -- --
61.47 0.365 16.9 -- 0.11 -0.456 -- -- -0.718 18 17.09 12 -- --
71.28 0.394 16.9 -0.576 -- -- -- -- -0.772 -- -- -- -- --
65.02 0.377 16.9 -- 0.49 -- -- -- -0.701 12.8 -- -- -- --
62.05 0.367 16.9 -- -- -0.463 -- -- -0.725 -- 19.92 20 -- --
80.03 0.418 16.9 -- -- -- -- -- -0.708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.65 temperature 25.0 270 > th dose independent rect. 1 4
2 39.87 temperature 25.0 270 > th dose dependent rect. 2 2
3 40.18 temperature 25.0 270 > th dose independent rect. 2 2
6 40.40 temperature 25.0 270 > th dose dependent rect. 1 4
16 41.31 atmosphere 1005.0 270 > th dose dependent rect. 24 5
17 41.35 atmosphere 1005.0 270 > th dose dependent rect. 1 3
19 41.54 humidity 90.0 10 < th dose independent rect. 4 1
21 41.68 atmosphere 1005.0 270 > th dose dependent rect. 2 1
23 41.71 temperature 25.0 90 > th dose independent rect. 4 1
27 41.80 temperature 25.0 90 > th dose dependent rect. 4 1
28 41.81 wind 1.0 30 > th dose dependent rect. 4 1
29 41.83 wind 1.0 90 > th dose independent rect. 4 1
43 42.34 atmosphere 1000.0 30 > th dose independent rect. 5 23
50 42.61 humidity 90.0 10 < th dose dependent rect. 4 1
71 42.96 atmosphere 995.0 90 > th dose dependent rect. 15 16
72 42.98 atmosphere 1005.0 90 > th dose dependent rect. 4 1
83 43.30 wind 7.0 1440 < th dose independent rect. 5 1
85 43.30 temperature 10.0 1440 > th dose independent rect. 5 1
88 43.30 temperature 30.0 1440 < th dose independent rect. 5 1
92 43.30 humidity 50.0 1440 > th dose independent rect. 5 1
101 43.30 atmosphere 995.0 1440 > th dose independent rect. 5 1
102 43.30 atmosphere 1015.0 1440 < th dose independent rect. 5 1
103 43.30 radiation 20.0 1440 < th dose independent rect. 5 1
112 43.30 temperature 10.0 1440 > th dose independent rect. 6 23
122 43.38 wind 3.0 30 < th dose dependent rect. 4 1
128 43.40 humidity 80.0 30 > th dose independent rect. 4 1
130 43.42 precipitation 0.1 30 < th dose independent rect. 4 1
131 43.42 precipitation 0.1 30 < th dose dependent rect. 4 1
132 43.43 wind 9.0 30 < th dose independent rect. 4 1
133 43.43 temperature 10.0 30 > th dose independent rect. 4 1
135 43.43 temperature 30.0 30 < th dose independent rect. 4 1
136 43.43 humidity 50.0 30 > th dose independent rect. 4 1
139 43.43 atmosphere 995.0 30 > th dose independent rect. 4 1
140 43.43 atmosphere 1005.0 30 > th dose independent rect. 4 1
141 43.43 atmosphere 1010.0 30 < th dose independent rect. 4 1
143 43.43 radiation 1.0 30 < th dose independent rect. 4 1
148 43.43 temperature 10.0 30 > th dose independent rect. 5 23
150 43.43 humidity 50.0 30 > th dose dependent rect. 4 1
153 43.43 radiation 1.0 30 < th dose dependent rect. 4 1
159 43.44 wind 3.0 30 < th dose independent rect. 4 1
166 43.46 atmosphere 1015.0 30 < th dose dependent rect. 4 1
173 43.57 atmosphere 995.0 10 > th dose dependent rect. 16 16
175 43.62 temperature 30.0 30 < th dose dependent rect. 4 1
268 44.50 atmosphere 1015.0 270 < th dose dependent rect. 20 5
278 44.66 wind 1.0 30 > th dose independent rect. 4 3
280 44.68 atmosphere 1000.0 90 > th dose independent rect. 15 16
288 44.78 temperature 25.0 1440 < th dose independent rect. 24 2
295 44.84 wind 9.0 30 < th dose independent rect. 5 23
308 44.97 temperature 15.0 270 > th dose dependent rect. 20 6
318 45.04 humidity 80.0 4320 < th dose dependent rect. 1 1
336 45.15 precipitation 0.1 30 < th dose independent rect. 5 23
340 45.15 precipitation 0.1 30 < th dose dependent rect. 5 23
346 45.20 radiation 1.0 270 < th dose independent rect. 1 17
348 45.20 temperature 10.0 10 > th dose dependent rect. 8 18
366 45.27 radiation 1.0 270 < th dose dependent rect. 1 17
367 45.28 temperature 25.0 1440 < th dose independent rect. 24 5
376 45.31 radiation 40.0 30 < th dose dependent rect. 15 17
380 45.34 temperature 20.0 10 > th dose independent rect. 8 18
388 45.36 atmosphere 1015.0 10 < th dose independent rect. 8 18
394 45.37 humidity 80.0 4320 < th dose dependent rect. 22 7
398 45.39 atmosphere 1000.0 10 > th dose independent rect. 16 16
401 45.40 atmosphere 1015.0 270 < th dose independent rect. 6 19
408 45.42 radiation 1.0 270 < th dose dependent rect. 24 20
416 45.44 atmosphere 995.0 720 > th dose dependent rect. 17 4
422 45.46 radiation 1.0 270 < th dose dependent sin 3 NA
428 45.47 precipitation 0.1 270 < th dose independent rect. 6 19
432 45.47 precipitation 0.1 270 < th dose dependent rect. 6 19
439 45.49 wind 1.0 90 > th dose independent rect. 7 8
452 45.52 wind 1.0 270 > th dose independent rect. 5 8
478 45.58 radiation 1.0 270 < th dose independent rect. 24 20
483 45.60 precipitation 0.1 10 < th dose independent rect. 8 18
484 45.60 precipitation 0.1 10 < th dose dependent rect. 8 18
486 45.61 temperature 30.0 270 < th dose independent rect. 6 7
488 45.61 radiation 30.0 270 < th dose independent rect. 14 16
492 45.62 temperature 30.0 270 < th dose independent rect. 21 14
511 45.65 temperature 30.0 270 < th dose independent rect. 20 17
514 45.65 atmosphere 1000.0 720 > th dose dependent rect. 19 1
535 45.69 wind 1.0 10 > th dose independent rect. 8 20
572 45.76 atmosphere 1015.0 270 < th dose independent rect. 20 17
574 45.76 temperature 10.0 10 > th dose dependent rect. 2 6
578 45.77 radiation 1.0 90 > th dose independent rect. 7 8
587 45.79 atmosphere 1010.0 270 < th dose independent rect. 24 8
613 45.83 temperature 20.0 90 > th dose independent rect. 22 17
623 45.86 wind 7.0 270 < th dose independent rect. 15 15
638 45.88 precipitation 0.1 90 < th dose independent rect. 7 8
644 45.88 precipitation 0.1 90 < th dose dependent rect. 7 8
648 45.90 radiation 1.0 270 < th dose independent sin 3 NA
650 45.90 wind 1.0 270 > th dose independent rect. 1 4
654 45.90 radiation 1.0 270 < th dose dependent rect. 1 13
660 45.91 wind 9.0 90 < th dose independent rect. 7 8
664 45.91 radiation 10.0 270 < th dose dependent rect. 1 6
667 45.92 radiation 10.0 270 < th dose independent rect. 1 5
668 45.92 radiation 40.0 10 < th dose independent rect. 2 6
669 45.92 temperature 10.0 90 > th dose independent rect. 7 8
670 45.92 atmosphere 1015.0 90 < th dose independent rect. 7 8
672 45.92 temperature 10.0 90 > th dose independent rect. 15 16
687 45.93 wind 1.0 270 > th dose independent rect. 6 18
694 45.94 wind 9.0 10 < th dose independent rect. 8 18
713 45.97 wind 9.0 10 < th dose independent rect. 2 6
715 45.97 temperature 10.0 10 > th dose independent rect. 2 6
717 45.97 temperature 30.0 10 < th dose independent rect. 2 6
718 45.97 humidity 50.0 10 > th dose independent rect. 2 6
720 45.97 atmosphere 995.0 10 > th dose independent rect. 2 6
721 45.97 atmosphere 1015.0 10 < th dose independent rect. 2 6
723 45.97 temperature 10.0 10 > th dose independent rect. 8 18
744 45.99 temperature 15.0 270 > th dose dependent rect. 23 1
754 46.00 radiation 1.0 270 < th dose independent rect. 1 13
759 46.01 wind 7.0 270 < th dose independent rect. 1 5
771 46.02 temperature 10.0 270 > th dose independent rect. 1 5
773 46.02 temperature 30.0 270 < th dose independent rect. 1 5
774 46.02 humidity 50.0 270 > th dose independent rect. 1 5
777 46.02 atmosphere 995.0 270 > th dose independent rect. 1 5
785 46.02 atmosphere 995.0 270 > th dose independent rect. 5 8
787 46.02 temperature 10.0 270 > th dose independent rect. 13 16
789 46.02 wind 1.0 10 > th dose independent rect. 8 18
790 46.02 temperature 10.0 270 > th dose independent rect. 6 19
813 46.04 atmosphere 995.0 90 > th dose independent rect. 7 8
837 46.05 radiation 1.0 270 < th dose independent rect. 1 8
849 46.06 wind 9.0 270 < th dose independent rect. 13 16
891 46.08 wind 9.0 270 < th dose independent rect. 6 19
922 46.11 wind 1.0 270 > th dose independent rect. 24 6
924 46.11 wind 7.0 10 < th dose independent rect. 8 8
925 46.11 radiation 1.0 10 > th dose independent rect. 8 8
950 46.14 precipitation 0.1 270 < th dose independent rect. 1 5
951 46.14 wind 9.0 1440 < th dose independent rect. 3 6
952 46.14 temperature 10.0 1440 > th dose independent rect. 3 6
955 46.14 humidity 50.0 1440 > th dose independent rect. 3 6
957 46.14 atmosphere 995.0 1440 > th dose independent rect. 3 6
963 46.14 temperature 20.0 10 > th dose independent rect. 8 8
965 46.14 temperature 10.0 1440 > th dose independent rect. 9 18
970 46.14 precipitation 0.1 270 < th dose dependent rect. 1 5
975 46.15 radiation 1.0 270 > th dose independent rect. 4 9
987 46.15 atmosphere 995.0 270 > th dose dependent rect. 13 8
991 46.16 precipitation 0.1 30 < th dose independent rect. 2 6
998 46.16 precipitation 0.1 30 < th dose dependent rect. 2 6