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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0128500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA polymerase delta small subunit (EC 2.7.7.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.15 (0.0336) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.842 (0.0869) R2dC : 0.172 R2C : 0.171
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0286 (0.0706) R2dN8 : 0.000385 R2N8 : -0.000521
σ : 0.633
deviance : 183.07
__
_____
C
peak time of C : 19.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.03 0.613 5.22 -0.565 0.841 0.634 0.0799 -0.676 -0.288 19.3 21.3 3169 -- --
170.87 0.609 5.2 -0.398 0.846 0.692 0.0717 -- -0.256 19.3 21.2 3309 -- --
169.67 0.607 5.23 -0.612 0.836 0.651 -- -0.735 -0.302 19.2 21.3 3866 -- --
170.73 0.609 5.21 -0.451 0.862 0.74 -- -- -0.29 19.3 21.3 3881 -- --
206.38 0.669 5.21 -0.603 -- 0.676 -- -0.636 -0.316 -- 21.21 3550 -- --
183.04 0.634 5.15 -0.00996 0.842 -- 0.1 -- -0.0301 19.4 -- -- -- --
183.07 0.634 5.15 -0.0123 0.842 -- -- -- -0.03 19.4 -- -- -- --
207.08 0.67 5.18 -0.461 -- 0.753 -- -- -0.292 -- 21.2 3530 -- --
174.11 0.615 5.18 -- 0.841 0.522 -- -- -0.159 19.3 21.29 3169 -- --
220.75 0.694 5.13 -0.0262 -- -- -- -- -0.0438 -- -- -- -- --
183.07 0.633 5.15 -- 0.842 -- -- -- -0.0286 19.4 -- -- -- --
205.38 0.667 5.15 -- -- 0.661 -- -- -0.133 -- 28.4 2064 -- --
220.77 0.694 5.13 -- -- -- -- -- -0.0409 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.52 temperature 10.0 30 > th dose dependent rect. 8 22
2 164.80 radiation 1.0 30 > th dose dependent rect. 5 3
14 164.88 precipitation 0.1 30 < th dose independent rect. 8 22
15 164.88 precipitation 0.1 30 < th dose dependent rect. 8 22
16 164.90 atmosphere 995.0 43200 < th dose dependent rect. 11 8
21 164.96 atmosphere 995.0 43200 < th dose independent rect. 7 8
24 165.00 atmosphere 995.0 43200 > th dose independent rect. 9 6
55 165.34 humidity 90.0 90 < th dose dependent rect. 6 1
57 165.35 humidity 90.0 10 < th dose dependent rect. 6 2
121 165.64 radiation 1.0 90 > th dose independent rect. 5 3
126 165.65 wind 7.0 43200 > th dose independent rect. 6 1
141 165.66 temperature 30.0 30 < th dose dependent rect. 6 2
171 165.80 temperature 10.0 43200 > th dose independent rect. 9 9
187 165.88 wind 1.0 30 > th dose independent rect. 6 2
190 165.92 atmosphere 995.0 43200 < th dose independent sin 23 NA
226 166.09 atmosphere 995.0 43200 > th dose independent sin 23 NA
232 166.12 wind 7.0 30 < th dose independent rect. 6 2
233 166.12 wind 9.0 1440 < th dose independent rect. 7 2
234 166.12 temperature 10.0 1440 > th dose independent rect. 7 2
238 166.12 humidity 50.0 1440 > th dose independent rect. 7 2
240 166.12 atmosphere 995.0 1440 > th dose independent rect. 7 2
241 166.12 atmosphere 1015.0 1440 < th dose independent rect. 7 2
244 166.12 temperature 10.0 1440 > th dose independent rect. 9 22
251 166.15 temperature 10.0 30 > th dose independent rect. 6 2
253 166.15 temperature 30.0 30 < th dose independent rect. 6 2
254 166.15 humidity 50.0 30 > th dose independent rect. 6 2
256 166.15 atmosphere 995.0 30 > th dose independent rect. 6 2
257 166.15 atmosphere 1015.0 30 < th dose independent rect. 6 2
259 166.15 temperature 10.0 30 > th dose independent rect. 8 22
260 166.15 atmosphere 1005.0 10 > th dose dependent rect. 7 1
264 166.18 precipitation 0.1 30 < th dose independent rect. 6 2
266 166.18 precipitation 0.1 30 < th dose dependent rect. 6 2
275 166.28 radiation 1.0 14400 > th dose independent rect. 18 12
300 166.36 wind 7.0 43200 < th dose independent rect. 6 1
308 166.47 wind 9.0 30 < th dose independent rect. 8 22
317 166.54 radiation 40.0 30 < th dose independent rect. 6 2
322 166.56 atmosphere 995.0 43200 < th dose dependent sin 22 NA
324 166.57 humidity 90.0 43200 > th dose independent rect. 5 3
328 166.64 humidity 90.0 43200 > th dose dependent rect. 6 1
345 166.78 temperature 20.0 4320 < th dose independent rect. 21 1
348 166.83 humidity 90.0 43200 > th dose independent rect. 7 1
349 166.83 humidity 90.0 10 < th dose independent rect. 6 2
356 166.91 temperature 20.0 4320 > th dose independent rect. 21 1
374 167.02 humidity 90.0 14400 > th dose dependent rect. 23 1
394 167.12 temperature 20.0 1440 < th dose independent rect. 5 1
402 167.16 radiation 1.0 14400 < th dose independent rect. 18 13
408 167.23 wind 9.0 43200 > th dose dependent rect. 18 14
420 167.31 radiation 1.0 14400 > th dose independent rect. 5 2
424 167.33 temperature 20.0 1440 > th dose dependent rect. 8 1
425 167.33 humidity 90.0 43200 > th dose dependent rect. 13 2
427 167.34 radiation 1.0 14400 < th dose independent rect. 5 2
449 167.41 wind 9.0 10 < th dose dependent rect. 6 2
453 167.43 temperature 20.0 1440 > th dose independent rect. 5 1
455 167.43 radiation 1.0 14400 < th dose independent rect. 3 4
456 167.43 temperature 20.0 1440 > th dose independent rect. 20 11
461 167.44 temperature 10.0 43200 > th dose independent rect. 9 7
472 167.47 temperature 20.0 1440 < th dose independent rect. 20 10
478 167.50 radiation 1.0 14400 > th dose independent rect. 18 1
501 167.51 temperature 25.0 270 > th dose dependent rect. 17 21
517 167.58 temperature 20.0 1440 < th dose independent rect. 23 1
532 167.63 atmosphere 995.0 30 > th dose independent rect. 8 22
536 167.64 temperature 20.0 1440 > th dose dependent rect. 20 1
556 167.73 wind 3.0 43200 < th dose dependent rect. 8 1
563 167.76 humidity 80.0 43200 > th dose dependent rect. 4 14
574 167.80 temperature 20.0 1440 < th dose independent rect. 4 3
575 167.80 humidity 90.0 43200 < th dose independent rect. 5 3
581 167.82 humidity 90.0 43200 < th dose independent rect. 17 3
587 167.84 humidity 90.0 43200 < th dose independent rect. 18 1
614 167.89 radiation 1.0 90 < th dose independent rect. 20 10
641 167.95 humidity 80.0 43200 > th dose dependent rect. 5 10
658 167.97 radiation 1.0 30 > th dose independent rect. 8 11
695 168.01 humidity 90.0 43200 < th dose independent rect. 7 1
702 168.02 humidity 90.0 4320 < th dose independent rect. 18 1
717 168.05 wind 9.0 43200 > th dose independent rect. 18 15
719 168.05 humidity 80.0 43200 > th dose dependent rect. 17 1
723 168.06 humidity 90.0 43200 > th dose independent rect. 4 16
744 168.09 temperature 15.0 43200 < th dose dependent rect. 1 1
754 168.12 atmosphere 995.0 30 > th dose dependent rect. 6 2
760 168.13 humidity 90.0 43200 > th dose independent rect. 4 19
761 168.13 humidity 80.0 43200 > th dose dependent sin 1 NA
804 168.19 humidity 90.0 43200 > th dose independent rect. 18 2
807 168.19 temperature 10.0 30 > th dose dependent rect. 6 2
830 168.22 temperature 10.0 270 > th dose dependent rect. 8 18
844 168.25 humidity 90.0 43200 < th dose independent rect. 4 16
847 168.25 radiation 1.0 90 < th dose dependent rect. 20 10
875 168.31 humidity 90.0 43200 > th dose independent rect. 4 11
882 168.32 radiation 1.0 14400 < th dose dependent rect. 5 1
887 168.33 humidity 90.0 43200 < th dose independent rect. 4 18
905 168.36 humidity 90.0 43200 > th dose independent rect. 12 3
921 168.38 humidity 90.0 43200 > th dose independent sin 2 NA
933 168.39 atmosphere 1015.0 10 < th dose dependent rect. 6 2
965 168.44 atmosphere 1015.0 90 < th dose dependent rect. 6 1
995 168.49 atmosphere 1015.0 30 < th dose independent rect. 8 22
996 168.49 temperature 15.0 43200 < th dose dependent rect. 21 5