Os03g0128400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0128400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.82 | 0.351 | 11.8 | 0.397 | 0.999 | -0.62 | 1.38 | 0.851 | -0.14 | 6.05 | 24.5 | 757 | -- | -- |
| 57.11 | 0.352 | 11.8 | 0.65 | 0.962 | -0.584 | 1.6 | -- | -0.0678 | 6.1 | 24.33 | 790 | -- | -- |
| 59.2 | 0.358 | 11.8 | 0.323 | 1.01 | -0.572 | -- | 1.12 | -0.154 | 5.61 | 24.2 | 685 | -- | -- |
| 62.44 | 0.368 | 11.8 | 0.673 | 0.974 | -0.528 | -- | -- | -0.0488 | 5.52 | 24.3 | 743 | -- | -- |
| 99.59 | 0.465 | 11.8 | 0.387 | -- | -0.818 | -- | 0.973 | -0.161 | -- | 24.92 | 1227 | -- | -- |
| 70.7 | 0.394 | 11.7 | 0.883 | 0.918 | -- | 1.24 | -- | 0.179 | 5.38 | -- | -- | -- | -- |
| 73.79 | 0.402 | 11.7 | 0.883 | 0.928 | -- | -- | -- | 0.173 | 4.94 | -- | -- | -- | -- |
| 100.67 | 0.467 | 11.8 | 0.677 | -- | -0.776 | -- | -- | -0.0663 | -- | 24.9 | 1286 | -- | -- |
| 74.04 | 0.401 | 11.8 | -- | 0.986 | -0.637 | -- | -- | -0.151 | 5.69 | 24.11 | 738 | -- | -- |
| 119.11 | 0.51 | 11.8 | 0.917 | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
| 94.34 | 0.454 | 11.8 | -- | 0.944 | -- | -- | -- | 0.0744 | 4.91 | -- | -- | -- | -- |
| 111.6 | 0.492 | 11.8 | -- | -- | -0.886 | -- | -- | -0.157 | -- | 24.7 | 1277 | -- | -- |
| 141.29 | 0.555 | 11.8 | -- | -- | -- | -- | -- | 0.0949 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 15 | 52.36 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 96 | 53.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 99 | 53.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 238 | 55.15 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 245 | 55.18 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 341 | 55.68 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 357 | 55.76 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 21 |
| 372 | 55.82 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 402 | 55.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 405 | 56.00 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 449 | 56.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 454 | 56.15 | temperature | 10 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 468 | 56.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 484 | 56.24 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 11 |
| 501 | 56.30 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 9 |
| 536 | 56.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 588 | 56.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 640 | 56.64 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 11 |
| 693 | 56.75 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 717 | 56.78 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 21 |
| 822 | 57.03 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 23 |
| 860 | 57.10 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 20 |
| 887 | 57.15 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 21 |
| 907 | 57.19 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 9 | 5 |
| 936 | 57.24 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 22 |
| 954 | 57.26 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |