Os03g0127700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os03g0127700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.88 | 0.569 | 3.08 | -0.205 | 0.246 | 2.91 | -0.0135 | 4.72 | -0.0643 | 8.26 | 9.256 | 200 | -- | -- |
| 147.45 | 0.566 | 3.07 | -0.257 | 0.244 | 2.77 | 0.0599 | -- | -0.083 | 7.86 | 10.3 | 185 | -- | -- |
| 146.89 | 0.564 | 3.08 | -0.205 | 0.246 | 2.9 | -- | 4.7 | -0.064 | 8.25 | 9.252 | 199 | -- | -- |
| 146.87 | 0.564 | 3.06 | -0.245 | 0.245 | 2.19 | -- | -- | -0.0697 | 8.04 | 10.3 | 192 | -- | -- |
| 150.21 | 0.571 | 3.09 | -0.205 | -- | 2.9 | -- | 4.89 | -0.0632 | -- | 9.2 | 197 | -- | -- |
| 156.06 | 0.586 | 3.08 | -0.346 | 0.225 | -- | 0.0852 | -- | -0.102 | 9.11 | -- | -- | -- | -- |
| 156.08 | 0.585 | 3.08 | -0.343 | 0.224 | -- | -- | -- | -0.101 | 9.22 | -- | -- | -- | -- |
| 150.11 | 0.571 | 3.07 | -0.234 | -- | 2.2 | -- | -- | -0.0615 | -- | 10.3 | 185 | -- | -- |
| 148.24 | 0.567 | 3.06 | -- | 0.245 | 2.35 | -- | -- | -0.0368 | 8.42 | 10.38 | 198 | -- | -- |
| 159 | 0.589 | 3.08 | -0.344 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 159.18 | 0.59 | 3.07 | -- | 0.224 | -- | -- | -- | -0.0632 | 9.34 | -- | -- | -- | -- |
| 151.54 | 0.573 | 3.07 | -- | -- | 2.33 | -- | -- | -0.0353 | -- | 10.31 | 186 | -- | -- |
| 162.11 | 0.594 | 3.07 | -- | -- | -- | -- | -- | -0.0621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.04 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 2 | 143.13 | wind | 1 | 10 | < th | dose independent | rect. | 5 | 1 |
| 3 | 143.40 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 3 |
| 7 | 143.54 | wind | 9 | 10 | > th | dose dependent | sin | 15 | NA |
| 8 | 143.58 | wind | 1 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 11 | 143.72 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 68 | 144.19 | wind | 1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 73 | 144.24 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 19 |
| 128 | 144.81 | wind | 1 | 90 | < th | dose independent | rect. | 5 | 1 |
| 167 | 145.25 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 10 |
| 200 | 145.66 | wind | 1 | 90 | < th | dose dependent | rect. | 5 | 1 |
| 234 | 145.84 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 21 |
| 277 | 146.29 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 21 |
| 283 | 146.44 | wind | 9 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 288 | 146.53 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 21 |
| 290 | 146.58 | wind | 9 | 10 | < th | dose independent | sin | 15 | NA |
| 369 | 147.14 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 4 |
| 399 | 147.33 | wind | 7 | 30 | < th | dose independent | rect. | 3 | 23 |
| 411 | 147.36 | wind | 7 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 426 | 147.39 | wind | 7 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 473 | 147.50 | wind | 9 | 10 | > th | dose independent | sin | 15 | NA |
| 489 | 147.62 | wind | 9 | 90 | < th | dose independent | sin | 15 | NA |
| 493 | 147.65 | wind | 9 | 90 | > th | dose independent | sin | 15 | NA |
| 517 | 147.79 | wind | 9 | 90 | > th | dose independent | sin | 12 | NA |
| 567 | 147.97 | wind | 7 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 585 | 147.99 | wind | 7 | 10 | > th | dose independent | rect. | 17 | 20 |
| 586 | 147.99 | wind | 9 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 631 | 148.01 | wind | 7 | 10 | > th | dose dependent | no | NA | NA |
| 677 | 148.06 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 12 |
| 753 | 148.24 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 775 | 148.32 | wind | 9 | 90 | > th | dose independent | rect. | 1 | 19 |
| 778 | 148.33 | wind | 9 | 90 | > th | dose independent | rect. | 1 | 17 |
| 782 | 148.34 | wind | 9 | 90 | > th | dose independent | rect. | 9 | 11 |
| 791 | 148.35 | wind | 9 | 90 | > th | dose independent | rect. | 9 | 9 |
| 843 | 148.43 | wind | 9 | 270 | > th | dose dependent | sin | 16 | NA |
| 878 | 148.48 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 12 |
| 886 | 148.49 | wind | 7 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 893 | 148.51 | wind | 7 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 897 | 148.51 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 912 | 148.54 | wind | 9 | 90 | > th | dose independent | rect. | 19 | 23 |