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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0127600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SMAD/FHA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0247) R2 : 0.489
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.35 (0.0647) R2dC : 0.487 R2C : 0.479
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.052) R2dN8 : 0.00993 R2N8 : 0.00249
σ : 0.466
deviance : 99.22
__
_____
C
peak time of C : 18.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.63 0.445 4.41 -0.0283 1.33 -0.973 0.122 -0.099 0.0954 21.4 12.59 245 -- --
89.65 0.441 4.41 -0.0322 1.34 -0.961 0.0604 -- 0.0938 21.3 12.9 238 -- --
89.66 0.441 4.41 -0.0337 1.34 -0.964 -- -0.0254 0.094 21.3 12.76 238 -- --
89.67 0.441 4.41 -0.0338 1.34 -0.964 -- -- 0.0938 21.3 12.82 238 -- --
90.63 0.443 4.37 -0.0352 -- -1.82 -- -0.217 0.0578 -- 5.424 793 -- --
99.11 0.467 4.39 0.0131 1.34 -- 0.211 -- 0.137 18.4 -- -- -- --
99.22 0.466 4.39 0.0104 1.35 -- -- -- 0.137 18.4 -- -- -- --
90.69 0.444 4.38 -0.0754 -- -1.84 -- -- 0.0549 -- 5.447 793 -- --
89.69 0.441 4.41 -- 1.34 -0.964 -- -- 0.0984 21.4 12.59 238 -- --
193.29 0.65 4.37 -0.0248 -- -- -- -- 0.109 -- -- -- -- --
99.22 0.466 4.39 -- 1.35 -- -- -- 0.136 18.4 -- -- -- --
90.83 0.444 4.38 -- -- -1.84 -- -- 0.0628 -- 5.608 793 -- --
193.31 0.649 4.37 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.52 radiation 1.0 270 < th dose independent rect. 3 16
2 85.70 radiation 20.0 270 < th dose dependent rect. 15 15
7 86.21 radiation 1.0 270 < th dose dependent rect. 3 16
9 86.37 radiation 1.0 270 > th dose independent sin 1 NA
11 86.42 radiation 1.0 270 < th dose independent sin 1 NA
17 86.88 wind 7.0 270 < th dose independent rect. 6 21
23 87.02 radiation 20.0 270 < th dose independent rect. 15 15
24 87.02 humidity 70.0 90 > th dose independent rect. 4 17
28 87.06 temperature 30.0 90 < th dose independent rect. 17 15
38 87.24 radiation 1.0 270 > th dose independent rect. 6 11
47 87.44 radiation 1.0 270 < th dose dependent sin 1 NA
58 87.59 wind 7.0 90 < th dose independent rect. 8 20
62 87.64 humidity 50.0 270 > th dose independent rect. 16 14
64 87.74 humidity 70.0 90 > th dose independent rect. 17 15
67 87.78 precipitation 0.1 270 < th dose independent rect. 5 23
68 87.78 precipitation 0.1 270 < th dose dependent rect. 5 23
71 87.81 humidity 60.0 90 > th dose dependent rect. 4 17
72 87.83 wind 9.0 1440 < th dose independent rect. 5 4
73 87.83 temperature 10.0 1440 > th dose independent rect. 5 4
76 87.83 humidity 50.0 1440 > th dose independent rect. 5 4
78 87.83 atmosphere 995.0 1440 > th dose independent rect. 5 4
79 87.83 atmosphere 1015.0 1440 < th dose independent rect. 5 4
80 87.83 temperature 10.0 1440 > th dose independent rect. 9 20
87 87.89 radiation 1.0 90 > th dose independent rect. 8 11
115 88.08 radiation 1.0 270 < th dose independent rect. 3 10
118 88.11 humidity 70.0 270 > th dose independent rect. 1 19
123 88.13 wind 1.0 30 > th dose independent rect. 4 4
129 88.17 radiation 1.0 270 < th dose independent rect. 3 7
173 88.41 humidity 50.0 90 > th dose dependent rect. 17 15
182 88.45 radiation 1.0 270 < th dose dependent rect. 3 10
201 88.52 radiation 10.0 270 < th dose dependent rect. 24 23
203 88.54 radiation 1.0 270 < th dose dependent rect. 3 7
207 88.54 radiation 10.0 270 < th dose dependent rect. 22 23
211 88.56 radiation 1.0 270 > th dose independent rect. 17 23
225 88.58 wind 1.0 270 > th dose independent rect. 4 1
234 88.62 humidity 60.0 270 > th dose dependent rect. 2 18
239 88.65 radiation 10.0 720 > th dose independent rect. 16 17
247 88.69 precipitation 0.1 90 < th dose independent rect. 8 20
248 88.69 precipitation 0.1 90 < th dose dependent rect. 8 20
328 89.09 humidity 70.0 90 > th dose independent rect. 11 21
374 89.26 atmosphere 1010.0 90 < th dose independent rect. 4 4
382 89.29 precipitation 0.1 720 < th dose independent rect. 21 22
385 89.29 precipitation 0.1 720 < th dose dependent rect. 21 22
394 89.32 wind 9.0 90 < th dose dependent rect. 8 20
427 89.42 wind 9.0 270 < th dose dependent rect. 6 20
428 89.43 radiation 10.0 270 > th dose independent rect. 14 23
436 89.45 radiation 1.0 270 < th dose independent rect. 22 23
439 89.47 temperature 10.0 1440 > th dose independent rect. 22 7
442 89.47 temperature 30.0 1440 < th dose independent rect. 22 7
446 89.47 humidity 50.0 1440 > th dose independent rect. 22 7
453 89.47 atmosphere 995.0 1440 > th dose independent rect. 22 7
454 89.47 radiation 20.0 1440 < th dose independent rect. 22 7
472 89.47 temperature 10.0 1440 > th dose independent rect. 5 17
502 89.54 wind 5.0 90 < th dose independent rect. 4 4
516 89.58 temperature 10.0 90 > th dose independent rect. 4 4
518 89.58 temperature 30.0 90 < th dose independent rect. 4 4
519 89.58 humidity 50.0 90 > th dose independent rect. 4 4
521 89.58 atmosphere 995.0 90 > th dose independent rect. 4 4
523 89.58 radiation 40.0 90 < th dose independent rect. 4 4
524 89.58 temperature 10.0 90 > th dose independent rect. 8 20
526 89.59 precipitation 0.1 90 < th dose independent rect. 4 4
528 89.59 precipitation 0.1 90 < th dose dependent rect. 4 4
536 89.60 atmosphere 995.0 90 > th dose independent rect. 8 20
553 89.65 radiation 40.0 90 < th dose dependent rect. 4 4
582 89.72 wind 7.0 270 < th dose independent rect. 6 11
604 89.79 wind 7.0 90 < th dose independent rect. 21 7
611 89.80 radiation 10.0 270 < th dose dependent rect. 15 22
701 89.97 radiation 10.0 720 > th dose independent sin 12 NA
712 90.00 wind 7.0 270 < th dose independent rect. 4 1
737 90.04 temperature 10.0 270 > th dose independent rect. 4 1
739 90.04 temperature 30.0 270 < th dose independent rect. 4 1
740 90.04 humidity 50.0 270 > th dose independent rect. 4 1
743 90.04 atmosphere 995.0 270 > th dose independent rect. 4 1
744 90.04 atmosphere 1010.0 270 < th dose independent rect. 4 1
746 90.04 radiation 20.0 270 < th dose independent rect. 4 1
750 90.04 temperature 10.0 270 > th dose independent rect. 5 23
758 90.06 radiation 40.0 270 < th dose dependent rect. 4 1
791 90.10 precipitation 0.1 720 < th dose independent rect. 16 17
796 90.10 precipitation 0.1 720 < th dose dependent rect. 16 17
801 90.11 radiation 1.0 720 < th dose independent rect. 16 20
806 90.12 radiation 1.0 270 < th dose independent rect. 4 1
808 90.12 precipitation 0.1 270 < th dose independent rect. 4 1
813 90.12 precipitation 0.1 270 < th dose dependent rect. 4 1
829 90.14 precipitation 0.1 90 < th dose independent rect. 21 7
834 90.14 precipitation 0.1 90 < th dose dependent rect. 21 7
848 90.16 humidity 50.0 90 > th dose dependent rect. 4 4
861 90.18 wind 9.0 90 < th dose dependent rect. 4 4
890 90.21 atmosphere 1015.0 90 < th dose independent rect. 8 20
901 90.22 radiation 10.0 720 < th dose dependent sin 13 NA
905 90.23 wind 9.0 43200 > th dose independent rect. 15 1
940 90.25 temperature 30.0 90 < th dose independent rect. 4 17
945 90.26 wind 9.0 4320 < th dose independent rect. 24 5
948 90.27 temperature 10.0 1440 > th dose independent rect. 24 5
951 90.27 temperature 30.0 1440 < th dose independent rect. 24 5
955 90.27 humidity 50.0 1440 > th dose independent rect. 24 5
964 90.27 atmosphere 995.0 1440 > th dose independent rect. 24 5
965 90.27 radiation 20.0 1440 < th dose independent rect. 24 5
979 90.27 temperature 10.0 1440 > th dose independent rect. 5 19
998 90.32 temperature 10.0 90 > th dose independent rect. 21 7
999 90.32 temperature 30.0 90 < th dose independent rect. 21 7
1000 90.32 humidity 50.0 90 > th dose independent rect. 21 7