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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0127200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to OsNAC7 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0299) R2 : 0.176
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.3 (0.541) R2dE : 0.174 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0357 (0.0629) R2dN8 : 0.000756 R2N8 : 0.00137
σ : 0.561
deviance : 145.03
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 4.782
memory length : 39
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.3
open length of G : 1.78

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.45 0.537 2.99 -0.559 0.278 7.56 -0.233 -19.3 -0.0871 9.07 9.605 30 11 1.04
135.44 0.546 2.98 -0.499 0.304 4.94 -0.286 -- -0.103 9.42 4.521 40 11.3 1.71
130.64 0.532 2.99 -0.565 0.278 7.59 -- -19.3 -0.0887 9.07 9.601 30 11 1.04
133.61 0.538 2.98 -0.507 0.289 5.02 -- -- -0.0967 9.17 4.744 39 11.2 1.78
135.07 0.541 3 -0.57 -- 8.1 -- -20.4 -0.084 -- 9.615 30 11 1.2
159.44 0.592 2.99 -0.558 0.331 -- -0.441 -- -0.123 9.76 -- -- -- --
160.18 0.593 2.99 -0.575 0.334 -- -- -- -0.124 9.67 -- -- -- --
138.41 0.548 2.99 -0.502 -- 5.12 -- -- -0.0922 -- 4.789 39 11.3 1.77
140.27 0.552 2.97 -- 0.283 5.22 -- -- -0.0486 9.41 4.743 39 11.4 1.78
166.81 0.603 2.99 -0.578 -- -- -- -- -0.124 -- -- -- -- --
168.89 0.608 2.97 -- 0.336 -- -- -- -0.0604 9.8 -- -- -- --
145.03 0.561 2.97 -- -- 5.3 -- -- -0.0357 -- 4.782 39 11.3 1.78
175.61 0.619 2.98 -- -- -- -- -- -0.0598 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.95 radiation 10 30 < th dose dependent rect. 11 1
7 134.75 radiation 1 90 < th dose independent rect. 10 1
11 135.40 radiation 1 10 < th dose independent rect. 7 5
13 135.40 radiation 1 10 < th dose dependent rect. 7 5
17 139.66 radiation 1 10 < th dose independent rect. 11 1
61 144.15 radiation 20 10 < th dose independent rect. 11 2
66 145.17 wind 1 90 < th dose independent rect. 6 1
67 145.28 radiation 10 1440 > th dose independent rect. 11 1
92 147.63 wind 1 10 < th dose independent rect. 7 2
102 148.23 radiation 1 1440 < th dose independent rect. 11 1
103 148.23 radiation 1 1440 < th dose dependent rect. 11 1
110 148.67 radiation 20 1440 < th dose dependent rect. 11 1
116 149.06 humidity 50 10 > th dose dependent rect. 10 2
117 149.21 humidity 50 10 > th dose dependent rect. 19 17
132 149.73 humidity 50 90 > th dose dependent rect. 19 17
133 149.74 humidity 60 30 > th dose independent rect. 19 17
135 149.76 radiation 40 10 < th dose independent rect. 10 2
142 149.88 humidity 60 10 > th dose independent rect. 10 2
155 150.08 wind 1 90 < th dose independent rect. 6 5
157 150.14 humidity 60 90 > th dose independent rect. 10 1
160 150.15 wind 1 10 < th dose dependent rect. 8 1
163 150.15 atmosphere 1005 90 > th dose dependent rect. 1 8
170 150.30 humidity 50 10 > th dose dependent rect. 7 6
172 150.34 humidity 70 270 > th dose independent rect. 17 19
173 150.36 wind 3 10 < th dose independent rect. 12 1
208 150.88 humidity 60 14400 < th dose independent rect. 6 1
210 150.88 humidity 60 14400 < th dose independent rect. 20 1
212 150.88 radiation 20 14400 > th dose independent rect. 17 1
264 150.88 humidity 60 14400 < th dose dependent rect. 6 1
266 150.88 humidity 60 14400 < th dose dependent rect. 20 1
268 150.88 radiation 20 14400 > th dose dependent rect. 17 1
321 150.89 wind 1 90 < th dose dependent rect. 6 1
325 150.95 humidity 70 270 > th dose independent rect. 6 6
331 151.01 atmosphere 1005 90 > th dose dependent rect. 6 3
345 151.19 radiation 10 1440 > th dose independent rect. 8 5
363 151.36 atmosphere 1005 10 > th dose dependent rect. 2 7
400 151.64 atmosphere 1005 90 > th dose independent rect. 1 8
404 151.68 humidity 60 14400 > th dose independent rect. 6 2
415 151.75 radiation 40 30 < th dose independent rect. 19 18
421 151.80 atmosphere 1005 10 > th dose dependent rect. 6 3
425 151.82 humidity 90 90 > th dose dependent rect. 6 1
433 151.86 atmosphere 1005 10 > th dose independent rect. 1 9
438 151.90 humidity 80 10 > th dose independent rect. 7 1
441 151.90 radiation 40 10 < th dose dependent rect. 7 6
445 151.92 radiation 40 10 < th dose dependent rect. 19 18
455 151.97 atmosphere 1005 90 > th dose independent rect. 23 10
463 152.00 atmosphere 1005 270 > th dose independent rect. 23 8
465 152.01 humidity 60 14400 > th dose independent rect. 2 6
485 152.13 radiation 10 1440 > th dose independent rect. 14 23
491 152.14 radiation 10 1440 > th dose independent rect. 8 8
500 152.18 radiation 10 1440 > th dose independent rect. 8 22
503 152.19 radiation 10 1440 > th dose independent rect. 8 10
538 152.34 radiation 10 1440 > th dose independent rect. 17 20
581 152.40 humidity 60 14400 > th dose independent rect. 20 12
596 152.42 radiation 10 1440 > th dose independent sin 0 NA
598 152.42 radiation 10 1440 > th dose independent rect. 17 23
609 152.46 atmosphere 1015 4320 > th dose independent rect. 10 1
610 152.46 atmosphere 1015 4320 < th dose independent rect. 10 1
635 152.55 radiation 10 1440 > th dose independent rect. 5 11
670 152.60 humidity 80 10 > th dose independent rect. 7 6
672 152.61 radiation 10 1440 > th dose independent no NA NA
753 152.62 radiation 10 1440 > th dose independent rect. 10 23
761 152.65 radiation 10 1440 > th dose independent rect. 5 8
774 152.65 atmosphere 1000 90 > th dose independent rect. 11 23
813 152.73 atmosphere 1015 4320 > th dose dependent rect. 8 1
832 152.78 radiation 10 1440 > th dose independent rect. 10 6
856 152.81 radiation 20 1440 < th dose independent rect. 11 1
928 152.91 radiation 40 30 < th dose independent rect. 7 6
932 152.91 humidity 90 720 > th dose dependent rect. 20 6
942 152.93 atmosphere 995 10 > th dose dependent rect. 12 22
972 152.98 wind 7 90 < th dose independent rect. 10 1