Os03g0127000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0127000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.53 | 0.445 | 6.85 | -1.13 | 0.967 | -2.58 | -0.773 | 0.887 | -0.253 | 6.09 | 24.56 | 1407 | -- | -- |
| 89.82 | 0.441 | 6.84 | -0.978 | 0.956 | -2.73 | -0.738 | -- | -0.244 | 6.13 | 24.06 | 1378 | -- | -- |
| 90.68 | 0.444 | 6.85 | -1.13 | 0.984 | -2.66 | -- | 0.884 | -0.246 | 5.92 | 24 | 1418 | -- | -- |
| 90.96 | 0.444 | 6.82 | -0.995 | 0.964 | -2.83 | -- | -- | -0.191 | 5.93 | 23.6 | 1415 | -- | -- |
| 138.3 | 0.548 | 6.87 | -1.16 | -- | -2.64 | -- | 1.02 | -0.267 | -- | 25 | 1347 | -- | -- |
| 183.32 | 0.635 | 6.7 | -0.176 | 1.04 | -- | -0.933 | -- | 0.318 | 5.87 | -- | -- | -- | -- |
| 185.37 | 0.638 | 6.7 | -0.184 | 1.04 | -- | -- | -- | 0.322 | 5.73 | -- | -- | -- | -- |
| 139.25 | 0.55 | 6.84 | -0.992 | -- | -2.83 | -- | -- | -0.208 | -- | 24.17 | 1352 | -- | -- |
| 113.07 | 0.495 | 6.78 | -- | 0.982 | -2.25 | -- | -- | -0.0249 | 6.12 | 23.9 | 1337 | -- | -- |
| 241.4 | 0.726 | 6.72 | -0.151 | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
| 186.26 | 0.638 | 6.7 | -- | 1.04 | -- | -- | -- | 0.342 | 5.74 | -- | -- | -- | -- |
| 160.72 | 0.59 | 6.81 | -- | -- | -2.24 | -- | -- | -0.035 | -- | 25 | 1319 | -- | -- |
| 242.01 | 0.726 | 6.72 | -- | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 7 | 89.10 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 12 | 89.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 51 | 89.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 71 | 89.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 86 | 90.04 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 93 | 90.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 100 | 90.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 103 | 90.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 213 | 91.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 389 | 94.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 392 | 94.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 508 | 95.52 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 519 | 95.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 579 | 95.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 584 | 95.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 595 | 95.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 673 | 96.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 689 | 96.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 691 | 96.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 937 | 97.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 942 | 97.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 960 | 97.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |