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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0126900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.53 (0.0467) R2 : 0.724
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.44 (0.13) R2dC : 0.809 R2C : 0.559
β3 : -3 (0.207) R2dE : 0.147 R2E : -0.0859
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.358 (0.0984) R2dN8 : 0.0106 R2N8 : 0.00774
σ : 0.874
deviance : 351.76
__
_____
C
peak time of C : 6.48
E
wheather : temperature
threshold : 18.33
memory length : 254
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.1
open length of G : 4.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
333.47 0.858 5.5 -0.126 4.39 -3.03 -0.196 5.23 -0.314 6.54 18.92 266 22.2 4.38
346.41 0.867 5.53 -0.38 4.43 -2.86 0.321 -- -0.356 6.53 18.55 261 22.1 4.5
333.36 0.85 5.5 -0.122 4.4 -3.02 -- 5.13 -0.315 6.53 18.72 265 22.2 4.43
346.17 0.867 5.53 -0.462 4.43 -2.95 -- -- -0.378 6.51 18.71 264 22.1 4.5
1082.1 1.53 5.58 -0.302 -- -2.29 -- 2.5 -0.114 -- 18.33 2 20.6 7.11
441.13 0.985 5.57 -0.653 3.89 -- -0.275 -- -0.568 7.46 -- -- -- --
441.34 0.984 5.57 -0.66 3.89 -- -- -- -0.568 7.46 -- -- -- --
934.71 1.42 5.59 -0.407 -- -2.88 -- -- -0.151 -- 15.41 7 18.8 8.91
351.76 0.874 5.53 -- 4.44 -3 -- -- -0.358 6.48 18.33 254 22.1 4.63
1250.19 1.65 5.67 -0.599 -- -- -- -- -0.506 -- -- -- -- --
452.8 0.995 5.56 -- 3.89 -- -- -- -0.494 7.47 -- -- -- --
521.61 1.06 5.56 -- -- -3.42 -- -- -0.0336 -- -3.932 67 13.3 13.9
1259.65 1.66 5.65 -- -- -- -- -- -0.439 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.11 temperature 20.0 270 > th dose dependent rect. 22 4
2 342.07 temperature 20.0 270 > th dose dependent rect. 21 6
6 345.08 temperature 20.0 270 > th dose independent rect. 22 5
7 346.13 temperature 20.0 90 > th dose independent rect. 22 7
64 362.29 temperature 20.0 270 > th dose independent rect. 7 20
72 363.54 temperature 20.0 90 > th dose independent rect. 7 22
91 366.44 wind 3.0 30 < th dose dependent rect. 11 18
109 368.27 wind 3.0 30 < th dose dependent rect. 22 7
112 368.69 wind 3.0 30 < th dose dependent rect. 19 10
122 369.15 temperature 10.0 90 > th dose dependent rect. 7 22
128 369.47 wind 3.0 30 < th dose dependent rect. 16 13
157 371.08 wind 3.0 30 < th dose dependent rect. 8 21
174 372.58 radiation 1.0 90 > th dose independent rect. 18 13
176 372.76 temperature 20.0 270 > th dose independent rect. 22 16
178 372.93 wind 3.0 30 < th dose dependent rect. 24 5
187 373.40 radiation 1.0 30 > th dose independent sin 8 NA
190 373.68 atmosphere 1015.0 90 < th dose independent rect. 7 22
191 373.77 wind 9.0 90 < th dose independent rect. 7 23
222 375.59 humidity 80.0 270 > th dose independent rect. 22 5
224 375.63 radiation 1.0 30 < th dose independent sin 7 NA
229 375.90 atmosphere 1010.0 270 < th dose independent rect. 21 6
276 377.19 radiation 1.0 90 < th dose dependent sin 9 NA
291 377.61 atmosphere 1015.0 90 < th dose dependent rect. 9 20
304 377.77 wind 9.0 90 < th dose dependent rect. 8 21
326 378.23 radiation 1.0 90 > th dose independent rect. 4 3
337 378.26 radiation 1.0 30 < th dose dependent sin 7 NA
372 379.28 temperature 15.0 270 > th dose independent rect. 7 10
374 379.40 wind 3.0 270 < th dose independent rect. 23 3
377 379.52 atmosphere 995.0 30 > th dose dependent rect. 5 19
393 379.92 wind 3.0 270 < th dose independent rect. 22 5
404 380.17 wind 9.0 270 < th dose independent rect. 7 10
420 380.57 atmosphere 1015.0 10 < th dose independent rect. 8 22
436 380.85 atmosphere 1015.0 10 < th dose dependent rect. 8 22
462 381.29 atmosphere 1010.0 90 < th dose independent rect. 21 8
486 381.80 wind 9.0 270 < th dose dependent rect. 22 5
488 381.81 radiation 1.0 10 < th dose independent rect. 24 16
498 382.02 radiation 1.0 10 < th dose independent rect. 24 12
512 382.17 wind 9.0 270 < th dose dependent rect. 11 16
527 382.43 humidity 60.0 270 > th dose dependent rect. 22 5
540 382.62 atmosphere 1010.0 270 < th dose independent rect. 23 3
557 382.91 radiation 1.0 10 < th dose independent rect. 24 8
593 383.33 radiation 1.0 30 < th dose independent rect. 24 6
600 383.42 wind 9.0 270 < th dose dependent rect. 13 14
604 383.51 wind 3.0 90 < th dose independent rect. 5 2
677 384.37 radiation 1.0 30 < th dose dependent rect. 24 16
697 384.73 radiation 1.0 30 < th dose dependent rect. 24 6
702 384.81 wind 3.0 270 < th dose independent rect. 24 1
703 384.81 wind 9.0 30 < th dose dependent rect. 15 14
711 384.93 humidity 70.0 30 > th dose dependent rect. 24 5
741 385.27 radiation 1.0 30 < th dose dependent rect. 24 12
757 385.48 humidity 60.0 270 > th dose dependent rect. 23 3
758 385.50 atmosphere 995.0 10 > th dose dependent rect. 5 21
779 385.75 wind 1.0 30 < th dose independent rect. 21 7
794 385.93 humidity 80.0 10 > th dose independent rect. 24 5
798 385.96 wind 1.0 30 < th dose independent rect. 23 5
802 385.96 wind 7.0 90 < th dose dependent rect. 5 2
808 386.06 wind 3.0 270 < th dose independent rect. 11 16
818 386.13 atmosphere 995.0 270 > th dose independent rect. 3 19
858 386.54 wind 3.0 10 < th dose dependent sin 13 NA
859 386.56 humidity 50.0 90 > th dose dependent rect. 5 8
870 386.72 atmosphere 995.0 270 > th dose independent rect. 17 14
873 386.78 wind 9.0 270 < th dose independent rect. 22 5
874 386.78 radiation 30.0 90 < th dose dependent rect. 6 1
877 386.80 precipitation 0.1 270 < th dose independent rect. 22 5
878 386.80 precipitation 0.1 270 < th dose dependent rect. 22 5
880 386.81 temperature 10.0 270 > th dose independent rect. 22 5
881 386.81 temperature 30.0 270 < th dose independent rect. 22 5
882 386.81 humidity 50.0 270 > th dose independent rect. 22 5
885 386.81 atmosphere 995.0 270 > th dose independent rect. 22 5
886 386.81 radiation 1.0 270 < th dose independent rect. 22 5
891 386.81 temperature 10.0 270 > th dose independent rect. 3 19
892 386.81 radiation 1.0 270 < th dose dependent rect. 22 5
900 386.84 radiation 1.0 90 > th dose dependent rect. 18 13
901 386.85 wind 1.0 90 > th dose independent rect. 6 1
929 387.16 precipitation 0.1 90 < th dose independent rect. 5 2
930 387.16 precipitation 0.1 90 < th dose dependent rect. 5 2
941 387.25 temperature 10.0 90 > th dose dependent rect. 5 2
959 387.46 wind 1.0 10 < th dose independent rect. 2 2
963 387.50 humidity 70.0 90 > th dose dependent rect. 21 8
968 387.56 temperature 10.0 90 > th dose independent rect. 5 2
970 387.56 temperature 30.0 90 < th dose independent rect. 5 2
971 387.56 humidity 50.0 90 > th dose independent rect. 5 2
973 387.56 atmosphere 995.0 90 > th dose independent rect. 5 2
974 387.56 atmosphere 1015.0 90 < th dose independent rect. 5 2
975 387.56 radiation 40.0 90 < th dose independent rect. 5 2
982 387.62 wind 1.0 10 < th dose independent rect. 11 17
985 387.63 precipitation 0.1 270 < th dose independent rect. 7 10
986 387.63 precipitation 0.1 270 < th dose dependent rect. 7 10
993 387.65 atmosphere 1015.0 270 < th dose independent rect. 7 10
994 387.65 temperature 10.0 270 > th dose independent rect. 17 14
995 387.65 radiation 40.0 270 < th dose independent rect. 17 14