FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0126800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.8 (0.0406) R2 : 0.738
β1 : -1.45 (0.146) R2dD : 0.0579 R2D : 0.0183
β2 : 2.93 (0.0978) R2dC : 0.518 R2C : 0.532
β3 : 1.98 (0.17) R2dE : 0.0841 R2E : 0.0589
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.2 (0.0899) R2dN8 : 0.153 R2N8 : 0.0206
σ : 0.753
deviance : 257.89
__
_____
C
peak time of C : 9.95
E
wheather : atmosphere
threshold : 1004
memory length : 13
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.32
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.56 0.744 5.8 -1.45 2.9 1.84 1.04 -1.85 -1.21 9.65 1005 10 0.966 --
255.53 0.745 5.8 -1.48 2.89 1.87 0.955 -- -1.2 9.69 1005 7 0.924 --
254.14 0.742 5.8 -1.43 2.94 1.97 -- -1.76 -1.21 9.82 1004 8 1.33 --
257.89 0.753 5.8 -1.45 2.93 1.98 -- -- -1.2 9.95 1004 13 1.32 --
288.73 0.791 5.83 -1.42 -- 3.51 -- 0.693 -0.988 -- 907.4 781 3.47 --
301.65 0.814 5.72 -1.48 3.19 -- 0.884 -- -0.899 9.08 -- -- -- --
304.37 0.817 5.72 -1.44 3.18 -- -- -- -0.898 9.08 -- -- -- --
286.59 0.788 5.85 -1.34 -- 3.93 -- -- -1.07 -- 958.3 790 3.61 --
312.91 0.828 5.77 -- 2.9 1.93 -- -- -1.03 10.1 1003 17 1.23 --
888.88 1.39 5.81 -1.45 -- -- -- -- -0.88 -- -- -- -- --
359.36 0.887 5.69 -- 3.18 -- -- -- -0.737 9.11 -- -- -- --
333.43 0.85 5.83 -- -- 4.12 -- -- -0.961 -- 965.6 808 3.75 --
944.44 1.43 5.77 -- -- -- -- -- -0.719 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.78 temperature 10.0 90 > th dose dependent rect. 7 22
3 247.11 temperature 10.0 270 > th dose dependent rect. 7 20
7 248.66 atmosphere 1005.0 270 > th dose dependent rect. 3 3
8 248.69 atmosphere 1015.0 30 < th dose dependent rect. 7 23
15 250.61 atmosphere 995.0 90 > th dose dependent rect. 4 21
16 250.69 atmosphere 1005.0 10 > th dose dependent sin 7 NA
18 251.02 temperature 15.0 90 > th dose dependent rect. 9 19
25 251.53 temperature 20.0 90 > th dose independent rect. 19 9
29 251.85 temperature 20.0 90 > th dose independent rect. 7 21
33 252.00 temperature 20.0 10 > th dose independent rect. 20 9
39 252.32 atmosphere 1005.0 90 > th dose dependent rect. 23 9
49 253.29 temperature 20.0 90 > th dose independent rect. 9 19
57 253.96 temperature 30.0 90 < th dose dependent rect. 4 21
62 254.41 atmosphere 1005.0 10 > th dose dependent rect. 23 10
64 254.54 temperature 15.0 10 > th dose dependent rect. 9 20
67 254.59 atmosphere 1005.0 10 > th dose dependent rect. 5 3
80 255.34 atmosphere 1010.0 30 < th dose dependent sin 7 NA
91 255.80 atmosphere 1015.0 30 < th dose independent rect. 7 23
95 255.86 temperature 20.0 270 > th dose independent rect. 23 3
111 256.18 atmosphere 1005.0 10 > th dose dependent rect. 16 17
132 256.85 temperature 20.0 90 > th dose independent rect. 23 5
159 257.50 radiation 1.0 30 > th dose dependent rect. 18 13
161 257.52 temperature 15.0 90 > th dose dependent rect. 19 9
177 257.80 wind 9.0 10 < th dose independent rect. 7 23
182 257.86 atmosphere 1005.0 10 > th dose dependent rect. 18 15
189 257.96 atmosphere 1010.0 270 < th dose independent rect. 7 20
191 257.98 atmosphere 1005.0 90 > th dose dependent rect. 18 15
201 258.11 atmosphere 1015.0 90 < th dose dependent rect. 24 13
228 258.64 atmosphere 1005.0 10 > th dose dependent rect. 13 20
239 258.79 radiation 1.0 30 > th dose dependent rect. 5 2
260 259.01 atmosphere 1015.0 270 < th dose dependent rect. 22 13
265 259.15 atmosphere 1015.0 90 < th dose dependent rect. 24 15
270 259.21 atmosphere 1010.0 90 < th dose independent rect. 9 19
273 259.31 temperature 25.0 10 > th dose independent rect. 5 2
308 259.93 atmosphere 1010.0 10 < th dose dependent rect. 24 12
309 259.95 wind 9.0 4320 < th dose independent rect. 7 1
318 260.01 atmosphere 1005.0 90 > th dose dependent rect. 11 22
326 260.13 atmosphere 1000.0 30 > th dose independent rect. 7 23
332 260.23 radiation 1.0 90 > th dose independent rect. 4 3
352 260.38 humidity 90.0 30 < th dose independent rect. 4 3
381 260.73 atmosphere 1015.0 90 < th dose dependent rect. 9 19
426 261.18 atmosphere 1005.0 90 > th dose independent rect. 5 2
430 261.25 temperature 20.0 90 > th dose independent rect. 1 3
488 262.02 radiation 10.0 10 < th dose independent rect. 6 19
509 262.24 wind 5.0 10 < th dose dependent rect. 6 1
544 262.52 temperature 30.0 30 < th dose dependent rect. 6 1
551 262.57 wind 3.0 30 < th dose independent rect. 6 1
555 262.59 atmosphere 1010.0 90 < th dose independent rect. 18 10
569 262.68 atmosphere 1005.0 270 > th dose independent rect. 3 4
585 262.79 atmosphere 1005.0 10 > th dose independent rect. 6 1
589 262.82 temperature 15.0 270 > th dose dependent rect. 22 15
591 262.83 temperature 15.0 10 > th dose dependent rect. 19 10
595 262.85 radiation 20.0 10 < th dose dependent rect. 6 1
596 262.85 humidity 80.0 30 > th dose dependent rect. 1 3
612 262.98 humidity 90.0 30 > th dose independent rect. 1 3
636 263.18 atmosphere 1000.0 90 > th dose independent rect. 4 21
642 263.21 humidity 70.0 30 > th dose dependent rect. 6 1
656 263.33 temperature 10.0 1440 > th dose independent rect. 7 1
660 263.33 temperature 30.0 1440 < th dose independent rect. 7 1
664 263.33 humidity 50.0 1440 > th dose independent rect. 7 1
669 263.33 atmosphere 995.0 1440 > th dose independent rect. 7 1
670 263.33 atmosphere 1015.0 1440 < th dose independent rect. 7 1
671 263.33 temperature 10.0 1440 > th dose independent rect. 8 23
684 263.39 temperature 10.0 30 > th dose independent rect. 6 1
686 263.39 temperature 30.0 30 < th dose independent rect. 6 1
687 263.39 humidity 50.0 30 > th dose independent rect. 6 1
691 263.39 atmosphere 1015.0 30 < th dose independent rect. 6 1
692 263.39 radiation 20.0 30 < th dose independent rect. 6 1
695 263.39 precipitation 0.1 30 < th dose independent rect. 6 1
697 263.39 precipitation 0.1 30 < th dose dependent rect. 6 1
725 263.58 wind 1.0 30 > th dose independent rect. 6 1
783 263.86 atmosphere 1015.0 90 < th dose dependent rect. 1 3
798 263.95 temperature 10.0 30 > th dose dependent rect. 6 1
802 264.01 atmosphere 995.0 90 > th dose dependent rect. 4 14
869 264.41 temperature 15.0 90 > th dose dependent rect. 18 23
877 264.46 humidity 90.0 10 < th dose dependent rect. 6 1
880 264.48 temperature 15.0 270 > th dose dependent rect. 17 21
883 264.50 temperature 15.0 270 > th dose dependent rect. 23 3
889 264.53 temperature 20.0 270 > th dose dependent rect. 18 19
894 264.55 atmosphere 1015.0 270 < th dose dependent rect. 23 3
955 264.88 atmosphere 1015.0 90 < th dose dependent rect. 19 10
960 264.92 humidity 50.0 10 > th dose independent rect. 7 23
983 265.08 atmosphere 1015.0 90 < th dose dependent rect. 18 23
985 265.10 atmosphere 1010.0 10 < th dose independent rect. 9 20