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Os03g0126100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Arabidopsis thaliana DNA, 40 kb surrounding ACS1 locus.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0156) R2 : 0.691
β1 : 1.17 (0.0571) R2dD : 0.297 R2D : 0.163
β2 : 0.745 (0.0377) R2dC : 0.265 R2C : 0.229
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.56 (0.0333) R2dN8 : 0.257 R2N8 : 0.116
σ : 0.293
deviance : 39.19
__
_____
C
peak time of C : 1.87
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.32 0.279 12 1.19 0.324 0.428 -0.325 0.593 0.581 4.04 0.17 82 -- --
36.65 0.282 12 1.22 0.338 0.414 0.207 -- 0.593 3.87 0.1669 78 -- --
35.56 0.278 12 1.19 0.346 0.393 -- 0.529 0.581 3.56 0.17 85 -- --
36.78 0.282 12 1.2 0.358 0.391 -- -- 0.584 3.65 0.17 83 -- --
38.13 0.288 12 1.16 -- 0.574 -- 0.377 0.575 -- 0.4522 206 -- --
38.08 0.289 12 1.19 0.743 -- 0.536 -- 0.564 1.77 -- -- -- --
39.19 0.293 12 1.17 0.745 -- -- -- 0.56 1.87 -- -- -- --
39.01 0.291 12 1.23 -- 0.602 -- -- 0.591 -- 0.56 184 -- --
74.51 0.404 12 -- 0.584 0.21 -- -- 0.435 2.86 1.66 81 -- --
72.75 0.399 12 1.2 -- -- -- -- 0.577 -- -- -- -- --
75.48 0.406 12.1 -- 0.767 -- -- -- 0.43 1.91 -- -- -- --
78.37 0.412 12 -- -- 0.595 -- -- 0.456 -- 1.91 194 -- --
111 0.492 12 -- -- -- -- -- 0.444 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.28 temperature 10.0 270 > th dose dependent rect. 17 10
12 32.37 temperature 15.0 10 > th dose dependent rect. 20 9
23 32.79 temperature 20.0 10 > th dose independent rect. 20 9
24 32.83 temperature 25.0 270 < th dose independent rect. 16 14
26 32.94 temperature 15.0 270 > th dose independent rect. 17 10
27 32.94 temperature 25.0 270 > th dose independent rect. 18 11
49 33.23 precipitation 0.1 270 < th dose independent rect. 3 14
51 33.23 precipitation 0.1 270 < th dose dependent rect. 3 14
75 33.40 humidity 80.0 1440 < th dose independent rect. 19 1
81 33.42 temperature 20.0 10 > th dose independent rect. 20 16
85 33.44 temperature 15.0 270 > th dose independent rect. 18 18
95 33.53 atmosphere 995.0 270 > th dose independent rect. 17 10
117 33.62 humidity 80.0 720 > th dose independent rect. 20 1
124 33.66 temperature 25.0 270 < th dose independent rect. 21 10
127 33.67 wind 9.0 270 < th dose independent rect. 17 10
133 33.68 radiation 20.0 270 < th dose independent rect. 17 10
136 33.68 temperature 10.0 270 > th dose independent rect. 3 14
137 33.68 atmosphere 1015.0 270 < th dose independent rect. 3 14
161 33.77 wind 9.0 270 < th dose independent rect. 3 14
163 33.78 temperature 20.0 270 > th dose independent rect. 12 5
177 33.85 radiation 40.0 270 < th dose dependent rect. 17 10
179 33.87 precipitation 0.1 270 < th dose independent rect. 17 10
180 33.87 precipitation 0.1 270 < th dose dependent rect. 17 10
184 33.89 temperature 25.0 270 < th dose independent sin 12 NA
191 33.89 temperature 10.0 30 > th dose dependent rect. 20 16
192 33.90 humidity 50.0 270 > th dose independent rect. 17 10
198 33.92 temperature 20.0 30 > th dose independent rect. 12 8
203 33.95 temperature 25.0 270 > th dose independent sin 11 NA
213 33.97 radiation 1.0 90 < th dose dependent sin 13 NA
221 34.01 radiation 1.0 90 < th dose independent sin 13 NA
222 34.01 humidity 80.0 720 > th dose independent rect. 19 8
231 34.02 atmosphere 995.0 270 > th dose independent rect. 17 19
235 34.03 wind 1.0 30 > th dose dependent rect. 12 8
251 34.07 radiation 1.0 30 > th dose independent rect. 12 21
252 34.08 humidity 80.0 4320 < th dose independent rect. 19 6
258 34.09 wind 1.0 30 > th dose independent rect. 12 8
261 34.09 temperature 10.0 270 > th dose dependent rect. 12 5
267 34.12 wind 1.0 270 > th dose independent rect. 12 5
268 34.12 precipitation 0.1 270 < th dose independent rect. 12 5
273 34.12 radiation 1.0 30 > th dose independent rect. 12 23
274 34.12 precipitation 0.1 270 < th dose dependent rect. 12 5
275 34.12 temperature 10.0 30 > th dose dependent rect. 12 8
278 34.13 temperature 10.0 1440 > th dose independent rect. 13 8
281 34.13 temperature 10.0 1440 > th dose independent rect. 21 16
284 34.13 atmosphere 995.0 1440 > th dose independent rect. 21 16
290 34.14 wind 9.0 270 < th dose independent rect. 17 19
291 34.15 radiation 1.0 30 > th dose independent sin 13 NA
292 34.15 atmosphere 1010.0 270 < th dose independent rect. 12 5
295 34.16 temperature 10.0 270 > th dose independent rect. 12 5
300 34.16 atmosphere 1010.0 30 < th dose independent rect. 12 8
301 34.16 precipitation 0.1 30 < th dose independent rect. 12 8
303 34.16 wind 9.0 30 < th dose independent rect. 20 16
305 34.16 precipitation 0.1 30 < th dose dependent rect. 12 8
306 34.16 temperature 10.0 270 > th dose dependent rect. 3 14
308 34.17 wind 9.0 30 < th dose independent rect. 12 8
309 34.17 temperature 10.0 30 > th dose independent rect. 12 8
316 34.17 atmosphere 995.0 30 > th dose independent rect. 20 16
319 34.18 wind 9.0 270 < th dose independent rect. 12 5
324 34.18 precipitation 0.1 270 < th dose independent rect. 12 19
327 34.18 precipitation 0.1 270 < th dose dependent rect. 12 19
342 34.20 humidity 80.0 4320 < th dose dependent rect. 19 6
348 34.22 humidity 80.0 1440 > th dose independent rect. 19 5
354 34.22 humidity 50.0 270 > th dose independent rect. 18 18
405 34.31 temperature 15.0 10 > th dose independent rect. 18 22
411 34.32 atmosphere 1015.0 30 < th dose independent rect. 20 16
412 34.32 radiation 1.0 30 > th dose independent rect. 12 19
421 34.33 humidity 90.0 270 < th dose independent rect. 12 5
426 34.34 wind 9.0 270 < th dose independent rect. 7 5
434 34.35 temperature 10.0 270 > th dose independent rect. 7 5
435 34.35 atmosphere 995.0 270 > th dose independent rect. 7 5
436 34.35 atmosphere 1015.0 270 < th dose independent rect. 7 5
438 34.35 precipitation 0.1 30 < th dose independent rect. 20 16
440 34.35 temperature 10.0 270 > th dose independent rect. 12 19
444 34.35 precipitation 0.1 30 < th dose dependent rect. 20 16
445 34.36 precipitation 0.1 270 < th dose independent rect. 7 5
450 34.36 atmosphere 1015.0 270 < th dose independent rect. 18 18
451 34.36 precipitation 0.1 270 < th dose independent rect. 17 19
453 34.36 precipitation 0.1 270 < th dose dependent rect. 7 5
456 34.36 precipitation 0.1 270 < th dose dependent rect. 17 19
457 34.37 humidity 50.0 270 > th dose independent rect. 7 5
458 34.37 humidity 50.0 10 > th dose independent rect. 12 8
473 34.38 radiation 1.0 30 > th dose independent rect. 16 15
474 34.38 wind 1.0 10 > th dose dependent rect. 14 6
485 34.40 humidity 50.0 30 > th dose independent rect. 20 16
488 34.40 wind 1.0 10 > th dose dependent rect. 16 4
496 34.41 wind 9.0 270 < th dose independent rect. 12 19
497 34.41 atmosphere 1015.0 270 < th dose dependent rect. 12 5
517 34.43 temperature 30.0 270 < th dose dependent rect. 7 7
526 34.44 radiation 1.0 30 > th dose independent rect. 16 17
551 34.46 radiation 1.0 270 > th dose independent rect. 7 5
583 34.48 wind 1.0 270 > th dose independent rect. 12 19
592 34.49 precipitation 0.1 270 < th dose independent rect. 21 10
596 34.49 precipitation 0.1 270 < th dose dependent rect. 21 10
632 34.53 radiation 1.0 30 > th dose independent rect. 14 19
638 34.54 radiation 1.0 270 > th dose independent rect. 12 5
658 34.56 wind 5.0 10 > th dose independent rect. 16 4
664 34.56 humidity 80.0 720 < th dose dependent rect. 19 5
667 34.57 atmosphere 995.0 270 > th dose independent rect. 12 5
684 34.58 humidity 80.0 720 < th dose dependent rect. 20 2
685 34.58 wind 1.0 90 > th dose dependent rect. 14 5
687 34.58 atmosphere 1015.0 30 < th dose dependent rect. 12 8
693 34.59 humidity 50.0 270 > th dose independent rect. 12 6
698 34.59 humidity 90.0 30 < th dose independent rect. 12 8
707 34.59 wind 9.0 270 < th dose dependent rect. 7 5
709 34.59 temperature 10.0 10 > th dose dependent rect. 5 14
726 34.60 radiation 1.0 90 < th dose dependent rect. 19 13
752 34.62 temperature 20.0 270 > th dose dependent rect. 19 2
754 34.62 temperature 20.0 10 > th dose dependent rect. 20 5
771 34.63 radiation 1.0 90 < th dose dependent rect. 5 23
812 34.67 wind 1.0 90 > th dose independent rect. 19 17
844 34.69 radiation 10.0 1440 > th dose independent rect. 17 1
862 34.69 temperature 15.0 270 > th dose independent rect. 7 14
863 34.69 humidity 50.0 270 > th dose independent rect. 12 19
865 34.69 radiation 1.0 30 < th dose independent rect. 19 19
874 34.70 wind 1.0 270 > th dose independent rect. 7 5
883 34.70 radiation 1.0 30 < th dose independent rect. 19 13
911 34.71 atmosphere 995.0 30 > th dose independent rect. 12 8
918 34.71 precipitation 0.1 30 < th dose independent rect. 12 23
926 34.71 precipitation 0.1 30 < th dose dependent rect. 12 23
927 34.72 precipitation 0.1 1440 < th dose independent rect. 12 1
934 34.72 radiation 10.0 1440 < th dose independent rect. 17 7
947 34.72 precipitation 0.1 1440 < th dose dependent rect. 12 1
959 34.73 radiation 10.0 1440 < th dose independent rect. 17 11
960 34.73 humidity 80.0 30 < th dose independent rect. 12 16
964 34.73 precipitation 0.1 30 < th dose independent rect. 12 21
976 34.73 precipitation 0.1 30 < th dose dependent rect. 12 21
977 34.74 temperature 10.0 1440 > th dose independent rect. 10 3
980 34.74 atmosphere 995.0 1440 > th dose independent rect. 10 3
985 34.74 radiation 10.0 1440 < th dose independent rect. 17 9
992 34.74 temperature 10.0 1440 > th dose independent rect. 13 21