Os03g0125600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os03g0125600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.68 | 0.335 | 11.4 | 0.404 | 1.15 | -1.82 | -0.0787 | 2.59 | 0.166 | 22 | 10 | 30 | -- | -- |
| 56.49 | 0.353 | 11.4 | 0.0215 | 1.12 | -1.76 | -0.511 | -- | 0.0639 | 22 | 2.428 | 47 | -- | -- |
| 51.7 | 0.335 | 11.4 | 0.415 | 1.15 | -1.82 | -- | 2.65 | 0.169 | 22 | 9.981 | 29 | -- | -- |
| 57.41 | 0.353 | 11.4 | 0.0547 | 1.15 | -1.79 | -- | -- | 0.0701 | 21.9 | 9.049 | 24 | -- | -- |
| 119.51 | 0.512 | 11.3 | 0.602 | -- | -2.14 | -- | 2.86 | 0.279 | -- | 18.32 | 5 | -- | -- |
| 86.63 | 0.436 | 11.5 | -0.315 | 1.41 | -- | -0.44 | -- | -0.183 | 23.2 | -- | -- | -- | -- |
| 87.46 | 0.438 | 11.5 | -0.298 | 1.41 | -- | -- | -- | -0.182 | 23.2 | -- | -- | -- | -- |
| 126.57 | 0.524 | 11.4 | 0.178 | -- | -2.43 | -- | -- | 0.156 | -- | 12.87 | 2 | -- | -- |
| 57.48 | 0.353 | 11.4 | -- | 1.15 | -1.76 | -- | -- | 0.0615 | 21.9 | 8.157 | 24 | -- | -- |
| 211.65 | 0.68 | 11.5 | -0.263 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 89.8 | 0.443 | 11.5 | -- | 1.41 | -- | -- | -- | -0.149 | 23.2 | -- | -- | -- | -- |
| 127.35 | 0.526 | 11.4 | -- | -- | -2.37 | -- | -- | 0.13 | -- | 11.28 | 2 | -- | -- |
| 213.48 | 0.682 | 11.5 | -- | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 3 | 51.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 4 | 51.68 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 10 | 51.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 11 | 51.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 13 | 51.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 52.08 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 17 | 52.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 18 | 52.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 52.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 29 | 52.63 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 32 | 52.68 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 36 | 52.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 38 | 53.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 39 | 53.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 40 | 53.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 41 | 53.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 42 | 53.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 43 | 53.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 45 | 53.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 46 | 53.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 66 | 53.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 102 | 53.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 129 | 53.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 133 | 53.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 154 | 53.59 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 155 | 53.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 171 | 53.62 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 205 | 53.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 216 | 53.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 230 | 53.73 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 242 | 53.76 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 248 | 53.77 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 271 | 53.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 289 | 53.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 398 | 54.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 406 | 54.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 445 | 54.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 470 | 54.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 472 | 54.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 570 | 54.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 649 | 54.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 671 | 54.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 743 | 54.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 760 | 54.49 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 790 | 54.53 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 809 | 54.55 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 817 | 54.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 837 | 54.57 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 976 | 54.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |