Os03g0124900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os03g0124900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 465.73 | 1.01 | 5.93 | -8.29 | 1.79 | 1.42 | -3.48 | -9.24 | -1.82 | 8.03 | 25.9 | 3169 | -- | -- |
| 476.43 | 1.02 | 5.66 | -6.95 | 1.72 | 2 | -3.37 | -- | -1.39 | 7.96 | 15.29 | 28203 | -- | -- |
| 500.6 | 1.04 | 5.93 | -8.33 | 1.79 | 1.37 | -- | -8.83 | -1.82 | 7.89 | 25.8 | 3081 | -- | -- |
| 503.03 | 1.04 | 5.71 | -7.55 | 1.65 | 2.27 | -- | -- | -1.51 | 7.73 | 14.5 | 47520 | -- | -- |
| 661.71 | 1.2 | 5.94 | -8.15 | -- | 1.39 | -- | -8.52 | -1.78 | -- | 24.89 | 2912 | -- | -- |
| 535.51 | 1.08 | 5.57 | -5.39 | 1.7 | -- | -3.2 | -- | -0.888 | 7.9 | -- | -- | -- | -- |
| 565.15 | 1.11 | 5.57 | -5.48 | 1.71 | -- | -- | -- | -0.887 | 7.73 | -- | -- | -- | -- |
| 661.07 | 1.2 | 5.73 | -7.34 | -- | 2.14 | -- | -- | -1.4 | -- | 14.58 | 47520 | -- | -- |
| 804.73 | 1.32 | 5.16 | -- | 1.69 | -3.45 | -- | -- | 0.936 | 7.59 | 22.13 | 47520 | -- | -- |
| 722.46 | 1.26 | 5.61 | -5.46 | -- | -- | -- | -- | -0.862 | -- | -- | -- | -- | -- |
| 1357.59 | 1.72 | 5.43 | -- | 1.67 | -- | -- | -- | -0.276 | 7.96 | -- | -- | -- | -- |
| 821.56 | 1.33 | 5.47 | -- | -- | -3.55 | -- | -- | -0.254 | -- | 34.93 | 47520 | -- | -- |
| 1509.3 | 1.81 | 5.47 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 429.84 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 2 | 431.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 12 | 434.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 20 | 435.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 21 | 435.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 30 | 435.89 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 57 | 437.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 59 | 437.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 62 | 437.36 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 67 | 437.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 76 | 437.91 | humidity | 90 | 43200 | > th | dose independent | sin | 3 | NA |
| 78 | 438.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 89 | 438.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 117 | 439.44 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |
| 132 | 439.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 20 |
| 140 | 440.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 145 | 440.31 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 157 | 440.52 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 181 | 440.97 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 186 | 441.02 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 206 | 441.11 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 254 | 441.97 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 320 | 443.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 322 | 443.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 329 | 443.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 330 | 443.65 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 348 | 443.86 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 368 | 444.18 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 369 | 444.18 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 373 | 444.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 374 | 444.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 375 | 444.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 377 | 444.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 381 | 444.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 400 | 444.29 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 401 | 444.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 412 | 444.46 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 417 | 444.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 419 | 444.56 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 421 | 444.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 461 | 444.77 | radiation | 1 | 43200 | > th | dose independent | sin | 7 | NA |
| 462 | 444.77 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 464 | 444.79 | radiation | 1 | 43200 | < th | dose independent | sin | 7 | NA |
| 498 | 444.91 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 617 | 445.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 620 | 445.38 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 625 | 445.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 646 | 445.67 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 665 | 445.81 | temperature | 20 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 670 | 445.84 | temperature | 20 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 673 | 445.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 680 | 445.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 684 | 445.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 688 | 445.97 | temperature | 20 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 728 | 446.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 765 | 446.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 786 | 446.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 795 | 446.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 803 | 446.54 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 828 | 446.68 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 842 | 446.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 846 | 446.80 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 895 | 447.07 | temperature | 20 | 43200 | > th | dose dependent | sin | 3 | NA |
| 940 | 447.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 965 | 447.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 976 | 447.44 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |