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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0124800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0442) R2 : 0.161
β1 : -0.221 (0.162) R2dD : 0.00362 R2D : 0.00193
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.57 (0.199) R2dE : 0.131 R2E : 0.0533
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.4 (0.763) R2dD*E : 0.101 R2D*E : 0.0325
γ1 : 0.0753 (0.0953) R2dN8 : 0.00181 R2N8 : -0.00302
σ : 0.823
deviance : 312.5
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.8
open length of G : 4.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.7 0.823 3.13 -0.189 0.296 1.44 0.6 -5.69 0.0776 21.7 1005 327 20.7 4.25
339.43 0.858 3.09 -0.305 0.268 0.966 -0.654 -- 0.0266 23.7 1005 319 21 4.07
307.78 0.817 3.13 -0.214 0.296 1.42 -- -5.42 0.0703 22.3 1005 321 20.9 4.07
340.65 0.86 3.12 -0.234 0.299 1.06 -- -- 0.0305 22 1006 295 21.1 4.7
312.5 0.823 3.12 -0.221 -- 1.57 -- -5.4 0.0753 -- 1005 321 20.8 4.1
355.8 0.884 3.13 -0.23 0.469 -- -0.641 -- -0.0611 0.358 -- -- -- --
357.24 0.885 3.13 -0.203 0.477 -- -- -- -0.0563 23.7 -- -- -- --
345.39 0.866 3.11 -0.234 -- 1.16 -- -- 0.0422 -- 1006 320 20.7 4.67
341.92 0.861 3.11 -- 0.315 1.06 -- -- 0.0476 22.2 1006 295 21.1 4.8
371.52 0.901 3.12 -0.189 -- -- -- -- -0.0505 -- -- -- -- --
358.32 0.885 3.13 -- 0.474 -- -- -- -0.0336 23.7 -- -- -- --
346.75 0.867 3.1 -- -- 1.16 -- -- 0.0642 -- 1005 320 20.7 4.82
372.46 0.901 3.12 -- -- -- -- -- -0.0295 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.18 atmosphere 1005 270 < th dose independent rect. 21 5
2 315.48 radiation 1 720 < th dose independent rect. 14 1
3 315.48 atmosphere 1005 270 < th dose independent rect. 23 2
4 315.48 radiation 1 720 < th dose dependent rect. 14 1
9 317.70 radiation 10 720 < th dose independent rect. 14 4
14 318.97 radiation 10 720 < th dose independent rect. 16 1
22 320.31 atmosphere 1005 720 > th dose independent rect. 19 5
23 320.60 radiation 10 720 < th dose dependent rect. 14 4
24 320.71 radiation 1 1440 > th dose independent rect. 14 1
26 321.03 radiation 10 720 < th dose independent rect. 14 13
51 323.09 radiation 1 1440 > th dose independent rect. 12 3
53 323.13 temperature 20 10 > th dose independent rect. 18 10
64 323.51 temperature 20 10 > th dose independent rect. 1 3
66 323.60 temperature 20 10 > th dose independent rect. 21 7
72 323.70 radiation 10 720 < th dose dependent rect. 14 13
74 323.88 wind 1 90 < th dose independent rect. 23 3
78 323.93 atmosphere 1005 10 < th dose independent rect. 18 11
80 324.01 atmosphere 1010 10 < th dose dependent rect. 18 10
84 324.11 temperature 20 90 > th dose independent rect. 17 11
96 324.39 wind 1 270 < th dose independent rect. 23 1
125 324.91 temperature 20 90 > th dose independent rect. 21 7
148 325.26 wind 1 90 < th dose independent rect. 20 6
152 325.28 wind 1 90 < th dose independent rect. 16 10
184 325.80 temperature 20 90 > th dose independent rect. 23 5
211 326.28 temperature 20 10 > th dose independent rect. 23 5
235 326.71 atmosphere 1010 90 < th dose dependent rect. 23 5
247 326.89 atmosphere 1005 270 > th dose independent sin 14 NA
257 327.00 wind 1 90 < th dose dependent rect. 24 1
274 327.22 wind 1 90 < th dose dependent rect. 23 3
277 327.27 atmosphere 1005 270 < th dose independent sin 13 NA
279 327.29 atmosphere 1005 10 < th dose dependent rect. 24 4
280 327.30 temperature 20 10 > th dose independent sin 11 NA
321 327.90 radiation 20 1440 < th dose dependent rect. 11 4
368 328.58 atmosphere 1005 270 > th dose independent rect. 19 11
391 328.71 radiation 20 1440 < th dose dependent rect. 11 2
392 328.71 wind 1 90 < th dose dependent rect. 20 6
398 328.77 wind 1 90 < th dose dependent rect. 16 10
408 328.84 wind 7 10 > th dose independent rect. 20 8
426 328.98 wind 1 90 > th dose independent sin 17 NA
452 329.19 humidity 90 270 > th dose dependent rect. 20 6
469 329.36 wind 1 90 < th dose independent rect. 6 20
493 329.56 temperature 20 10 > th dose independent rect. 12 16
496 329.66 wind 7 720 > th dose independent rect. 16 2
540 329.99 atmosphere 1005 10 < th dose independent sin 11 NA
567 330.21 wind 1 90 < th dose independent rect. 6 22
571 330.26 wind 7 90 > th dose independent rect. 23 5
576 330.31 wind 5 10 > th dose dependent rect. 22 7
584 330.35 wind 7 270 > th dose independent rect. 24 1
586 330.35 wind 7 270 > th dose dependent rect. 24 1
592 330.39 wind 5 10 > th dose dependent rect. 24 5
654 330.78 atmosphere 1005 10 > th dose independent sin 12 NA
671 330.88 humidity 70 720 > th dose independent rect. 14 5
690 331.04 humidity 90 720 > th dose dependent rect. 20 1
701 331.10 radiation 10 1440 < th dose dependent rect. 9 12
721 331.17 radiation 1 1440 < th dose independent rect. 9 1
722 331.17 radiation 1 1440 < th dose dependent rect. 9 1
727 331.19 temperature 20 10 > th dose independent rect. 14 14
748 331.33 atmosphere 1005 10 > th dose independent rect. 15 10
764 331.41 humidity 70 720 > th dose independent rect. 14 14
769 331.43 wind 7 10 > th dose dependent rect. 20 9
788 331.46 atmosphere 1010 30 < th dose dependent sin 11 NA
799 331.51 temperature 20 90 > th dose independent rect. 21 11
830 331.64 radiation 1 1440 > th dose independent rect. 9 1
872 331.73 humidity 50 720 > th dose dependent rect. 14 5
878 331.76 wind 5 720 > th dose dependent rect. 17 1
890 331.82 radiation 20 1440 < th dose independent rect. 11 2
914 331.91 temperature 20 10 > th dose independent rect. 21 11
936 332.01 wind 5 4320 < th dose independent rect. 21 1
946 332.03 humidity 70 720 > th dose independent rect. 16 2
947 332.03 wind 5 270 > th dose independent rect. 21 6
987 332.15 radiation 10 720 < th dose independent sin 16 NA