Os03g0124200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pto-like protein kinase F.
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Os03g0124200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pto-like protein kinase F.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.08 | 0.24 | 10.1 | 0.893 | 1.05 | -0.528 | -0.165 | 0.635 | 0.124 | 6.84 | 28.9 | 4194 | -- | -- |
| 25.99 | 0.237 | 10 | 1.01 | 1.04 | -0.469 | -0.149 | -- | 0.143 | 6.86 | 27.8 | 4142 | -- | -- |
| 26.15 | 0.238 | 10.1 | 0.892 | 1.05 | -0.526 | -- | 0.629 | 0.125 | 6.84 | 28.9 | 4194 | -- | -- |
| 26.06 | 0.238 | 10 | 1.01 | 1.04 | -0.472 | -- | -- | 0.141 | 6.87 | 27.81 | 4141 | -- | -- |
| 83.39 | 0.425 | 10.1 | 1.05 | -- | -0.465 | -- | -0.00679 | 0.16 | -- | 28.4 | 4257 | -- | -- |
| 33.01 | 0.269 | 10 | 1.17 | 1.05 | -- | -0.137 | -- | 0.173 | 6.69 | -- | -- | -- | -- |
| 33.06 | 0.269 | 10 | 1.17 | 1.05 | -- | -- | -- | 0.173 | 6.69 | -- | -- | -- | -- |
| 82.89 | 0.424 | 10.1 | 1.04 | -- | -0.487 | -- | -- | 0.151 | -- | 27.6 | 4265 | -- | -- |
| 28.98 | 0.251 | 10.1 | -- | 1.06 | -0.962 | -- | -- | -0.251 | 6.75 | 20.5 | 47520 | -- | -- |
| 90.83 | 0.445 | 10.1 | 1.19 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 69.13 | 0.389 | 10.1 | -- | 1.07 | -- | -- | -- | 0.0429 | 6.63 | -- | -- | -- | -- |
| 86.65 | 0.434 | 10.1 | -- | -- | -0.982 | -- | -- | -0.238 | -- | 20.47 | 47520 | -- | -- |
| 128.45 | 0.529 | 10.1 | -- | -- | -- | -- | -- | 0.0617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 2 | 26.10 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 6 | 26.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 11 | 26.19 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 12 | 26.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 15 | 26.22 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 20 | 26.24 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 34 | 26.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 65 | 26.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 111 | 26.42 | temperature | 25 | 14400 | > th | dose dependent | sin | 20 | NA |
| 134 | 26.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 197 | 26.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 252 | 26.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 20 |
| 259 | 26.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 337 | 26.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 347 | 26.49 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 548 | 26.57 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 584 | 26.58 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 588 | 26.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 682 | 26.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 697 | 26.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 752 | 26.62 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 879 | 26.64 | temperature | 25 | 14400 | < th | dose independent | sin | 4 | NA |
| 889 | 26.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 896 | 26.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 900 | 26.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 19 |
| 945 | 26.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 946 | 26.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 982 | 26.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 21 |