FiT-DB / Search/ Help/ Sample detail

Os03g0123600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0193) R2 : 0.445
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.751 (0.0494) R2dC : 0.281 R2C : 0.248
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.454 (0.0405) R2dN8 : 0.197 R2N8 : 0.164
σ : 0.363
deviance : 60.34
__
_____
C
peak time of C : 4.19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.43 0.276 12.5 0.0596 0.713 -1.08 0.25 -0.14 0.258 4.22 23.57 4448 -- --
34.45 0.273 12.5 0.0396 0.715 -1.05 0.251 -- 0.256 4.22 23.54 4424 -- --
34.59 0.274 12.5 0.0526 0.715 -1.09 -- -0.175 0.259 4.22 23.33 4433 -- --
34.63 0.274 12.5 0.0423 0.715 -1.04 -- -- 0.255 4.22 23.63 4441 -- --
59.91 0.361 12.6 -0.0423 -- -1.03 -- 0.816 0.277 -- 36.68 4052 -- --
51.15 0.335 12.5 0.589 0.738 -- 0.2 -- 0.521 4.2 -- -- -- --
51.26 0.335 12.5 0.587 0.739 -- -- -- 0.52 4.2 -- -- -- --
60.29 0.362 12.5 0.106 -- -1.06 -- -- 0.284 -- 28.17 4047 -- --
34.65 0.274 12.5 -- 0.715 -1.07 -- -- 0.244 4.21 23.53 4449 -- --
80.84 0.42 12.5 0.617 -- -- -- -- 0.539 -- -- -- -- --
60.34 0.363 12.5 -- 0.751 -- -- -- 0.454 4.19 -- -- -- --
60.51 0.362 12.5 -- -- -1.09 -- -- 0.267 -- 27.93 4076 -- --
90.87 0.445 12.5 -- -- -- -- -- 0.471 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.79 radiation 1.0 43200 > th dose independent rect. 18 11
2 32.98 radiation 40.0 43200 < th dose dependent rect. 18 3
5 33.03 radiation 40.0 43200 < th dose dependent rect. 18 1
7 33.04 radiation 20.0 43200 < th dose dependent rect. 18 1
12 33.04 radiation 40.0 43200 < th dose dependent rect. 18 10
22 33.09 radiation 10.0 43200 < th dose dependent rect. 18 7
43 33.23 radiation 1.0 43200 < th dose independent rect. 18 11
47 33.45 humidity 60.0 43200 < th dose independent rect. 21 12
48 33.47 radiation 1.0 14400 > th dose independent rect. 18 18
50 33.50 radiation 1.0 14400 > th dose independent rect. 18 15
51 33.50 radiation 10.0 4320 > th dose dependent rect. 17 14
52 33.51 humidity 60.0 43200 < th dose independent rect. 4 5
54 33.53 humidity 60.0 43200 > th dose independent rect. 21 12
59 33.56 radiation 1.0 43200 > th dose independent rect. 18 1
69 33.57 humidity 60.0 43200 < th dose independent rect. 7 2
76 33.59 radiation 1.0 14400 < th dose independent rect. 18 18
81 33.62 radiation 1.0 14400 < th dose independent rect. 24 12
82 33.63 radiation 1.0 14400 > th dose independent rect. 4 8
83 33.63 radiation 1.0 14400 < th dose independent rect. 4 8
124 33.66 humidity 60.0 43200 < th dose dependent rect. 20 14
125 33.67 radiation 1.0 14400 > th dose independent sin 8 NA
127 33.68 radiation 1.0 14400 < th dose independent sin 8 NA
128 33.68 radiation 1.0 14400 > th dose independent rect. 4 5
144 33.69 radiation 1.0 14400 < th dose independent rect. 4 5
196 33.71 humidity 70.0 43200 < th dose dependent rect. 21 12
204 33.74 radiation 1.0 14400 > th dose dependent rect. 18 1
222 33.79 radiation 1.0 43200 < th dose independent rect. 18 3
230 33.80 radiation 1.0 43200 < th dose independent rect. 18 1
235 33.80 radiation 1.0 43200 < th dose independent rect. 18 7
245 33.81 humidity 60.0 43200 > th dose independent rect. 4 5
268 33.86 radiation 1.0 14400 > th dose independent rect. 18 22
269 33.86 humidity 60.0 43200 < th dose dependent rect. 2 8
281 33.88 humidity 60.0 43200 > th dose independent rect. 8 1
328 33.96 radiation 1.0 14400 < th dose independent rect. 18 22
346 34.01 atmosphere 1015.0 43200 > th dose independent rect. 23 1
351 34.02 radiation 1.0 14400 > th dose independent rect. 15 21
359 34.04 atmosphere 1015.0 43200 < th dose independent rect. 23 1
406 34.08 radiation 1.0 4320 > th dose dependent rect. 18 12
418 34.09 radiation 10.0 4320 > th dose dependent rect. 16 16
427 34.12 radiation 1.0 14400 < th dose independent rect. 15 21
460 34.16 radiation 10.0 4320 > th dose dependent rect. 5 2
497 34.20 precipitation 0.1 43200 > th dose independent rect. 2 6
498 34.20 precipitation 0.1 43200 < th dose independent rect. 2 6
500 34.20 radiation 40.0 4320 < th dose independent rect. 15 18
504 34.20 temperature 20.0 4320 < th dose dependent rect. 22 3
507 34.20 precipitation 0.1 43200 < th dose dependent rect. 2 6
529 34.24 atmosphere 1015.0 43200 < th dose independent rect. 20 13
543 34.26 temperature 20.0 43200 < th dose dependent rect. 5 1
544 34.26 precipitation 0.1 43200 > th dose dependent rect. 2 6
546 34.27 atmosphere 1015.0 43200 < th dose independent rect. 6 1
547 34.27 atmosphere 1015.0 43200 > th dose independent rect. 5 2
559 34.28 radiation 1.0 14400 > th dose independent no NA NA
641 34.30 atmosphere 1015.0 43200 > th dose independent rect. 20 12
665 34.31 humidity 50.0 43200 > th dose independent rect. 20 16
670 34.32 humidity 50.0 43200 > th dose independent sin 8 NA
671 34.32 atmosphere 1015.0 43200 < th dose independent sin 10 NA
679 34.32 atmosphere 1015.0 43200 > th dose independent rect. 18 6
715 34.33 atmosphere 1015.0 43200 < th dose independent rect. 20 8
741 34.34 radiation 1.0 14400 > th dose independent rect. 10 23
774 34.35 temperature 10.0 4320 > th dose dependent rect. 22 1
777 34.35 temperature 20.0 4320 < th dose dependent rect. 22 6
778 34.36 humidity 50.0 43200 < th dose independent sin 8 NA
800 34.36 radiation 1.0 14400 > th dose independent rect. 8 23
805 34.37 atmosphere 1015.0 43200 > th dose independent sin 11 NA
810 34.37 atmosphere 1015.0 43200 < th dose independent rect. 18 6
827 34.37 temperature 30.0 4320 < th dose dependent rect. 22 1
834 34.38 radiation 1.0 14400 < th dose independent no NA NA
926 34.39 temperature 20.0 4320 < th dose dependent rect. 22 8
948 34.40 wind 1.0 43200 > th dose dependent rect. 8 4