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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0122400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0246) R2 : 0.05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.254 (0.0519) R2dN8 : 0.0646 R2N8 : 0.05
σ : 0.464
deviance : 98.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.07 0.443 3.15 -0.385 0.148 -0.229 -0.786 0.263 0.213 4.98 19.45 10 -- --
89.32 0.44 3.15 -0.374 0.157 -0.23 -0.725 -- 0.208 5.58 19.46 9 -- --
90.65 0.443 3.15 -0.385 0.148 -0.229 -- 0.263 0.213 4.98 19.45 10 -- --
90.63 0.443 3.15 -0.396 0.144 -0.208 -- -- 0.214 5.88 19.46 9 -- --
91.57 0.446 3.15 -0.387 -- -0.199 -- 0.138 0.218 -- 19.46 9 -- --
91.81 0.449 3.15 -0.383 0.204 -- -0.45 -- 0.208 8.33 -- -- -- --
92.21 0.45 3.15 -0.394 0.208 -- -- -- 0.21 9.49 -- -- -- --
91.67 0.446 3.15 -0.387 -- -0.197 -- -- 0.216 -- 19.45 9 -- --
94.82 0.454 3.14 -- 0.145 -0.21 -- -- 0.254 5.77 19.45 9 -- --
94.76 0.455 3.15 -0.396 -- -- -- -- 0.21 -- -- -- -- --
96.31 0.459 3.14 -- 0.209 -- -- -- 0.254 9.64 -- -- -- --
95.75 0.456 3.14 -- -- -0.201 -- -- 0.255 -- 19.46 9 -- --
98.89 0.464 3.14 -- -- -- -- -- 0.254 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.12 wind 1.0 30 < th dose dependent rect. 13 14
3 86.14 wind 1.0 30 < th dose dependent rect. 21 6
9 86.16 wind 1.0 30 < th dose dependent rect. 10 17
10 86.24 wind 9.0 14400 < th dose independent rect. 9 1
11 86.26 wind 1.0 30 < th dose dependent rect. 23 4
14 86.34 wind 1.0 30 < th dose dependent rect. 1 2
18 86.51 wind 1.0 1440 > th dose independent rect. 17 1
19 86.51 wind 1.0 30 < th dose independent rect. 1 2
21 86.58 wind 7.0 10 < th dose dependent rect. 4 6
22 86.61 precipitation 0.1 1440 > th dose independent rect. 10 3
23 86.61 precipitation 0.1 1440 > th dose dependent rect. 10 3
25 86.72 wind 1.0 1440 < th dose dependent rect. 17 1
30 86.80 wind 7.0 14400 > th dose dependent rect. 7 3
31 86.80 radiation 10.0 90 < th dose dependent rect. 9 3
33 86.81 wind 1.0 1440 < th dose independent rect. 17 1
39 86.88 wind 5.0 10 < th dose independent rect. 4 6
40 86.88 temperature 20.0 30 > th dose dependent rect. 2 1
44 86.91 atmosphere 1005.0 30 > th dose independent rect. 2 1
45 86.93 temperature 20.0 30 > th dose independent rect. 2 1
52 87.01 atmosphere 1000.0 30 > th dose dependent rect. 2 1
55 87.04 precipitation 0.1 1440 > th dose independent rect. 12 1
59 87.04 precipitation 0.1 1440 > th dose dependent rect. 12 1
64 87.07 humidity 80.0 30 > th dose independent rect. 2 1
65 87.07 wind 1.0 10 < th dose independent rect. 13 14
70 87.08 temperature 15.0 90 > th dose dependent rect. 3 6
76 87.14 temperature 25.0 30 < th dose independent rect. 2 1
77 87.14 humidity 60.0 30 > th dose dependent rect. 2 1
91 87.16 temperature 10.0 30 > th dose independent rect. 2 1
94 87.16 humidity 50.0 30 > th dose independent rect. 2 1
98 87.16 atmosphere 1010.0 30 < th dose independent rect. 2 1
100 87.16 radiation 1.0 30 < th dose independent rect. 2 1
105 87.16 precipitation 0.1 30 < th dose independent rect. 2 1
106 87.16 temperature 10.0 30 > th dose independent rect. 3 23
107 87.16 radiation 1.0 30 < th dose dependent rect. 2 1
112 87.16 precipitation 0.1 30 < th dose dependent rect. 2 1
113 87.17 wind 1.0 270 < th dose dependent rect. 20 3
123 87.27 wind 7.0 14400 < th dose independent rect. 4 7
126 87.28 wind 7.0 14400 > th dose independent rect. 4 7
136 87.29 temperature 15.0 10 > th dose dependent rect. 3 7
139 87.31 wind 7.0 14400 > th dose independent rect. 7 3
140 87.32 temperature 25.0 10 < th dose independent rect. 20 8
143 87.33 wind 7.0 14400 < th dose independent rect. 24 11
145 87.34 wind 9.0 1440 < th dose independent rect. 4 6
149 87.37 wind 7.0 14400 > th dose independent rect. 24 11
150 87.39 temperature 20.0 90 > th dose independent rect. 3 6
155 87.40 wind 7.0 14400 < th dose independent rect. 5 5
161 87.44 wind 7.0 14400 < th dose independent rect. 7 3
162 87.44 atmosphere 1005.0 10 > th dose independent rect. 10 5
163 87.44 atmosphere 1015.0 30 < th dose dependent rect. 2 1
164 87.44 atmosphere 995.0 90 > th dose dependent rect. 9 6
172 87.48 wind 1.0 1440 < th dose independent rect. 17 6
176 87.50 atmosphere 1000.0 10 > th dose dependent rect. 10 5
186 87.54 temperature 25.0 10 > th dose independent rect. 18 16
199 87.60 radiation 1.0 720 > th dose independent rect. 18 1
211 87.60 temperature 30.0 30 < th dose dependent rect. 2 1
213 87.60 atmosphere 1000.0 270 > th dose dependent rect. 9 2
217 87.61 temperature 25.0 10 > th dose independent rect. 16 18
233 87.64 wind 7.0 14400 > th dose dependent rect. 5 6
257 87.75 wind 1.0 270 < th dose independent rect. 21 2
258 87.75 atmosphere 1005.0 10 > th dose independent rect. 10 3
263 87.76 precipitation 0.1 10 < th dose independent rect. 10 18
265 87.76 precipitation 0.1 10 < th dose dependent rect. 10 18
274 87.80 atmosphere 1005.0 270 > th dose independent rect. 9 2
276 87.80 atmosphere 1000.0 10 > th dose independent rect. 4 6
292 87.85 atmosphere 1010.0 10 < th dose independent rect. 4 5
300 87.86 temperature 10.0 10 > th dose independent rect. 4 6
302 87.86 humidity 50.0 10 > th dose independent rect. 4 6
305 87.86 temperature 10.0 10 > th dose independent rect. 10 18
308 87.87 wind 1.0 1440 > th dose independent rect. 17 6
310 87.87 radiation 1.0 43200 < th dose dependent rect. 3 1
313 87.88 precipitation 0.1 10 < th dose independent rect. 4 6
316 87.88 precipitation 0.1 10 < th dose dependent rect. 4 6
320 87.89 atmosphere 1000.0 10 > th dose dependent rect. 10 3
322 87.89 wind 3.0 90 < th dose dependent rect. 3 12
332 87.92 wind 7.0 1440 > th dose independent rect. 2 1
338 87.92 wind 9.0 10 < th dose independent rect. 10 18
339 87.92 wind 7.0 1440 > th dose dependent rect. 2 1
344 87.92 atmosphere 995.0 10 > th dose dependent rect. 10 18
345 87.93 temperature 30.0 10 < th dose independent rect. 4 6
350 87.95 temperature 25.0 270 > th dose independent rect. 10 1
354 87.95 wind 3.0 90 < th dose dependent rect. 3 10
356 87.95 temperature 10.0 90 > th dose dependent rect. 15 18
361 87.96 atmosphere 995.0 10 > th dose dependent rect. 4 6
366 87.99 radiation 10.0 90 < th dose dependent rect. 11 1
380 88.02 wind 3.0 90 < th dose dependent rect. 3 16
383 88.03 radiation 40.0 10 < th dose independent rect. 4 6
387 88.04 temperature 10.0 10 > th dose dependent rect. 15 19
388 88.05 atmosphere 995.0 10 > th dose independent rect. 4 16
389 88.05 atmosphere 1015.0 90 < th dose independent rect. 15 18
401 88.07 atmosphere 995.0 270 > th dose dependent rect. 6 7
402 88.07 wind 9.0 10 < th dose dependent rect. 20 8
403 88.07 wind 5.0 14400 > th dose dependent rect. 24 12
411 88.08 humidity 70.0 10 > th dose independent rect. 19 9
413 88.08 atmosphere 1010.0 10 < th dose independent rect. 15 18
426 88.10 wind 1.0 30 > th dose independent rect. 2 1
435 88.11 wind 1.0 10 > th dose independent rect. 15 15
436 88.11 atmosphere 1000.0 10 > th dose independent rect. 15 19
441 88.12 temperature 25.0 10 < th dose independent sin 10 NA
454 88.13 wind 9.0 10 < th dose dependent rect. 10 18
458 88.14 precipitation 0.1 10 < th dose independent rect. 20 8
464 88.14 precipitation 0.1 10 < th dose dependent rect. 20 8
487 88.15 temperature 15.0 720 > th dose dependent rect. 22 1
500 88.16 humidity 50.0 10 > th dose independent rect. 10 18
521 88.17 wind 7.0 14400 > th dose dependent rect. 21 15
525 88.18 radiation 20.0 10 < th dose independent rect. 4 22
537 88.19 temperature 25.0 10 > th dose independent rect. 21 13
539 88.19 radiation 1.0 90 < th dose dependent rect. 4 1
550 88.20 atmosphere 995.0 10 > th dose independent rect. 10 18
561 88.22 temperature 10.0 10 > th dose independent rect. 20 8
563 88.22 humidity 50.0 10 > th dose independent rect. 20 8
566 88.22 atmosphere 995.0 10 > th dose independent rect. 20 8
567 88.22 radiation 1.0 10 < th dose independent rect. 20 8
575 88.22 temperature 10.0 10 > th dose independent rect. 4 16
577 88.22 atmosphere 1015.0 10 < th dose independent rect. 4 16
581 88.22 radiation 1.0 10 < th dose dependent rect. 20 8
590 88.23 wind 1.0 14400 > th dose independent rect. 22 1
606 88.24 temperature 25.0 10 > th dose independent rect. 13 21
607 88.24 atmosphere 1000.0 30 > th dose independent rect. 13 21
610 88.24 wind 1.0 43200 < th dose dependent rect. 16 5
612 88.24 wind 1.0 270 < th dose dependent rect. 13 10
617 88.25 wind 9.0 10 < th dose independent rect. 20 8
619 88.25 wind 9.0 10 < th dose independent rect. 4 15
620 88.25 precipitation 0.1 10 < th dose independent rect. 4 16
629 88.25 precipitation 0.1 10 < th dose dependent rect. 4 16
639 88.26 wind 1.0 1440 < th dose dependent rect. 17 6
642 88.27 temperature 25.0 720 > th dose independent rect. 21 2
654 88.28 precipitation 0.1 90 < th dose independent rect. 5 23
660 88.28 precipitation 0.1 90 < th dose dependent rect. 5 23
680 88.29 atmosphere 1015.0 270 < th dose independent rect. 11 22
681 88.29 temperature 10.0 90 > th dose dependent rect. 4 1
708 88.30 atmosphere 995.0 90 > th dose dependent rect. 4 1
722 88.31 atmosphere 1015.0 30 < th dose independent rect. 13 21
724 88.31 wind 1.0 43200 < th dose dependent rect. 16 3
737 88.32 humidity 50.0 10 > th dose dependent rect. 19 9
743 88.33 wind 1.0 10 < th dose independent rect. 6 21
746 88.34 wind 9.0 14400 > th dose independent rect. 1 1
748 88.34 temperature 25.0 10 > th dose independent rect. 16 14
751 88.34 wind 9.0 14400 > th dose dependent rect. 1 1
760 88.35 wind 9.0 1440 < th dose independent rect. 3 1
761 88.35 temperature 10.0 1440 > th dose independent rect. 3 1
764 88.35 temperature 30.0 1440 < th dose independent rect. 3 1
768 88.35 humidity 50.0 1440 > th dose independent rect. 3 1
777 88.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
778 88.35 radiation 1.0 1440 < th dose independent rect. 3 1
798 88.35 temperature 25.0 10 > th dose independent rect. 10 3
804 88.35 temperature 10.0 1440 > th dose independent rect. 4 23
808 88.35 radiation 1.0 1440 < th dose dependent rect. 3 1
823 88.36 wind 9.0 90 < th dose independent rect. 4 1
824 88.36 temperature 10.0 90 > th dose independent rect. 4 1
826 88.36 temperature 30.0 90 < th dose independent rect. 4 1
827 88.36 humidity 50.0 90 > th dose independent rect. 4 1
830 88.36 atmosphere 995.0 90 > th dose independent rect. 4 1
831 88.36 atmosphere 1010.0 90 < th dose independent rect. 4 1
833 88.36 radiation 20.0 90 < th dose independent rect. 4 1
842 88.36 temperature 10.0 90 > th dose independent rect. 5 23
856 88.36 wind 9.0 10 < th dose dependent rect. 4 15
859 88.37 precipitation 0.1 90 < th dose independent rect. 4 1
860 88.37 temperature 30.0 30 < th dose independent rect. 10 3
861 88.37 radiation 10.0 10 > th dose independent rect. 10 5
862 88.37 wind 1.0 14400 > th dose independent rect. 16 7
865 88.37 precipitation 0.1 90 < th dose dependent rect. 4 1
869 88.38 radiation 1.0 90 < th dose independent rect. 4 1
907 88.40 temperature 25.0 10 > th dose independent rect. 24 10
933 88.41 temperature 30.0 90 < th dose independent rect. 9 6
937 88.41 wind 9.0 30 < th dose independent rect. 3 23
942 88.41 temperature 10.0 10 > th dose dependent rect. 24 10
946 88.42 wind 9.0 1440 < th dose independent rect. 9 1
961 88.42 temperature 10.0 90 > th dose dependent rect. 13 20
962 88.43 atmosphere 1005.0 90 > th dose independent rect. 4 1
985 88.44 wind 1.0 90 > th dose independent rect. 9 6
988 88.44 humidity 50.0 10 > th dose independent rect. 4 16
990 88.44 atmosphere 1015.0 270 < th dose independent rect. 13 17
992 88.44 wind 9.0 90 < th dose dependent rect. 4 1