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Os03g0122200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 50S ribosomal protein L11.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.027) R2 : 0.714
β1 : 1.04 (0.137) R2dD : 0.0827 R2D : -0.0627
β2 : 1.85 (0.0618) R2dC : 0.56 R2C : 0.553
β3 : -0.48 (0.139) R2dE : 0.0119 R2E : -0.0609
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.14 (0.496) R2dD*E : 0.182 R2D*E : -0.0322
γ1 : -0.47 (0.0624) R2dN8 : 0.0618 R2N8 : 0.0841
σ : 0.471
deviance : 102.48
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C
peak time of C : 21.5
E
wheather : radiation
threshold : 1.171
memory length : 8664
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.19 0.477 12.3 1.01 1.82 -0.534 -0.371 -5 -0.47 21.5 0.9799 8610 -- --
120.64 0.512 12.4 0.13 1.92 -0.377 0.188 -- -0.741 21.5 31.71 19886 -- --
102.48 0.471 12.3 1.04 1.85 -0.48 -- -5.14 -0.47 21.5 1.171 8664 -- --
118.78 0.508 12.4 0.119 1.92 -0.456 -- -- -0.743 21.6 40.83 18919 -- --
205.95 0.672 12.3 0.0498 -- 1.03 -- -0.368 -0.617 -- 0.8353 11089 -- --
126.43 0.527 12.3 -0.00878 1.83 -- -0.271 -- -0.627 21.6 -- -- -- --
126.71 0.527 12.3 0.00131 1.84 -- -- -- -0.627 21.6 -- -- -- --
190.53 0.643 12.3 -0.773 -- -1.58 -- -- -0.633 -- 2.165 1055 -- --
117.55 0.505 12.4 -- 1.83 -0.558 -- -- -0.843 21.6 40.43 19143 -- --
325.81 0.843 12.3 0.0154 -- -- -- -- -0.631 -- -- -- -- --
126.71 0.527 12.3 -- 1.84 -- -- -- -0.627 21.6 -- -- -- --
147.06 0.565 12.3 -- -- -2.58 -- -- -0.838 -- 2.07 1123 -- --
325.81 0.843 12.3 -- -- -- -- -- -0.633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.48 humidity 90 14400 > th dose dependent rect. 5 8
8 101.26 humidity 70 43200 > th dose dependent rect. 14 15
9 101.30 humidity 90 14400 < th dose independent rect. 20 4
14 101.40 temperature 10 1440 > th dose dependent rect. 9 2
15 101.40 temperature 30 1440 < th dose dependent rect. 9 2
19 101.46 humidity 80 43200 < th dose dependent rect. 5 3
27 101.52 humidity 70 43200 > th dose dependent sin 14 NA
32 101.57 wind 1 43200 > th dose independent rect. 13 10
33 101.58 temperature 20 43200 < th dose dependent rect. 21 1
42 101.68 humidity 90 14400 > th dose dependent rect. 5 21
45 101.70 temperature 25 14400 < th dose dependent rect. 5 10
54 101.76 temperature 25 14400 < th dose dependent sin 1 NA
57 101.77 temperature 25 14400 < th dose dependent rect. 4 18
90 101.88 humidity 90 14400 > th dose independent rect. 21 3
107 101.93 temperature 25 14400 < th dose dependent rect. 10 15
129 101.99 temperature 25 14400 < th dose dependent sin 19 NA
138 102.00 humidity 90 14400 > th dose independent rect. 19 18
218 102.16 humidity 90 14400 > th dose independent rect. 22 1
221 102.16 temperature 15 270 > th dose dependent rect. 24 14
226 102.18 wind 3 43200 > th dose dependent rect. 6 2
242 102.22 temperature 25 14400 < th dose dependent no NA NA
251 102.23 temperature 25 14400 < th dose dependent rect. 21 23
280 102.28 temperature 25 14400 < th dose dependent rect. 17 23
285 102.29 temperature 25 14400 < th dose dependent rect. 13 23
293 102.31 wind 9 43200 > th dose independent rect. 20 15
344 102.40 humidity 80 14400 > th dose dependent rect. 18 2
350 102.41 humidity 90 14400 > th dose independent rect. 5 5
362 102.44 humidity 90 14400 > th dose dependent sin 1 NA
403 102.51 wind 9 43200 > th dose independent rect. 20 13
419 102.54 humidity 90 14400 > th dose dependent rect. 1 22
431 102.57 temperature 20 14400 < th dose independent rect. 9 18
440 102.58 temperature 20 14400 > th dose independent rect. 9 18
464 102.63 wind 9 43200 < th dose independent rect. 20 15
481 102.65 humidity 90 14400 > th dose independent rect. 18 8
504 102.67 humidity 70 43200 > th dose dependent rect. 20 18
506 102.68 wind 1 43200 < th dose independent rect. 13 9
521 102.71 humidity 90 14400 < th dose independent rect. 5 3
525 102.71 temperature 25 14400 < th dose dependent rect. 13 1
528 102.71 wind 9 43200 > th dose dependent rect. 20 12
538 102.72 humidity 80 14400 > th dose dependent rect. 18 4
548 102.73 humidity 70 43200 > th dose dependent rect. 18 19
553 102.74 humidity 90 14400 > th dose independent rect. 5 22
556 102.74 humidity 90 14400 > th dose dependent rect. 18 21
560 102.75 humidity 90 14400 < th dose independent rect. 5 21
568 102.76 temperature 20 43200 > th dose independent rect. 10 12
570 102.76 temperature 20 14400 > th dose independent rect. 4 21
579 102.77 temperature 20 14400 < th dose independent sin 17 NA
600 102.79 temperature 10 270 > th dose dependent sin 5 NA
605 102.80 temperature 20 43200 < th dose independent rect. 11 11
607 102.80 humidity 90 14400 < th dose independent rect. 18 19
623 102.82 humidity 80 43200 > th dose independent rect. 24 16
655 102.85 humidity 90 14400 > th dose dependent rect. 8 18
667 102.87 temperature 20 14400 > th dose independent sin 16 NA
693 102.89 wind 9 43200 < th dose independent rect. 20 13
695 102.89 humidity 90 14400 > th dose dependent no NA NA
713 102.91 temperature 20 14400 < th dose independent rect. 4 21
738 102.93 humidity 90 14400 > th dose independent rect. 9 18
742 102.93 temperature 10 14400 > th dose dependent rect. 19 1
745 102.93 temperature 10 14400 > th dose dependent rect. 19 3
752 102.94 humidity 90 14400 < th dose independent rect. 9 17
790 102.97 temperature 25 14400 < th dose dependent rect. 7 1
799 102.98 humidity 90 14400 < th dose independent rect. 10 15
816 102.99 humidity 90 14400 > th dose independent rect. 8 23
820 102.99 humidity 90 14400 > th dose dependent rect. 8 23
821 102.99 humidity 90 14400 > th dose dependent rect. 21 23
874 103.03 humidity 80 43200 > th dose independent rect. 23 18
883 103.04 humidity 80 43200 < th dose independent rect. 23 18
894 103.05 humidity 80 43200 > th dose independent rect. 1 14
945 103.09 humidity 80 43200 < th dose independent rect. 24 16
963 103.10 temperature 20 14400 > th dose independent rect. 23 23
979 103.12 humidity 90 14400 > th dose independent no NA NA
987 103.13 temperature 20 14400 > th dose independent no NA NA