Os03g0122000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0122000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.79 | 0.467 | 10.6 | 0.315 | 1.81 | -2.03 | -0.446 | 3.52 | 0.222 | 21.1 | 1.032 | 221 | 3.94 | 1.05 |
| 100.41 | 0.467 | 10.7 | 0.159 | 1.82 | -1.62 | -0.616 | -- | 0.221 | 21.1 | 1.199 | 224 | 3.92 | 1.08 |
| 99.4 | 0.464 | 10.6 | 0.339 | 1.81 | -2.05 | -- | 3.83 | 0.221 | 21.1 | 1.047 | 221 | 3.92 | 1.1 |
| 101.5 | 0.469 | 10.7 | 0.149 | 1.81 | -1.59 | -- | -- | 0.22 | 21.1 | 1.2 | 232 | 3.9 | 1.25 |
| 218.63 | 0.689 | 10.6 | 0.395 | -- | -2.51 | -- | 3.44 | 0.0895 | -- | 1.602 | 418 | 4.15 | 1.63 |
| 141.76 | 0.558 | 10.6 | 0.037 | 2.09 | -- | -0.197 | -- | 0.34 | 20.5 | -- | -- | -- | -- |
| 141.88 | 0.558 | 10.6 | 0.0432 | 2.09 | -- | -- | -- | 0.34 | 20.5 | -- | -- | -- | -- |
| 149.43 | 0.569 | 10.6 | 0.0543 | -- | -1.73 | -- | -- | 0.131 | -- | 5.8 | 513 | 2.82 | 3.2 |
| 101.92 | 0.47 | 10.7 | -- | 1.77 | -1.61 | -- | -- | 0.199 | 21.2 | 1.218 | 232 | 3.9 | 1.28 |
| 386.07 | 0.918 | 10.6 | 0.0348 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 141.93 | 0.557 | 10.6 | -- | 2.09 | -- | -- | -- | 0.336 | 20.5 | -- | -- | -- | -- |
| 133.71 | 0.539 | 10.5 | -- | -- | -1.78 | -- | -- | 0.371 | -- | 16.22 | 555 | 1.52 | 4 |
| 386.1 | 0.917 | 10.6 | -- | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.69 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 2 | 103.43 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 104.65 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 5 | 105.90 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 8 | 106.09 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 14 | 106.99 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 19 | 107.58 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 25 | 107.75 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 26 | 107.77 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 50 | 110.29 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 63 | 111.65 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 69 | 112.81 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 21 |
| 80 | 113.39 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 97 | 113.69 | wind | 3.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 99 | 113.82 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 15 |
| 102 | 114.01 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 116 | 114.41 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 119 | 114.66 | wind | 1.0 | 90 | > th | dose independent | sin | 4 | NA |
| 151 | 115.78 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 163 | 115.84 | wind | 1.0 | 90 | < th | dose independent | sin | 4 | NA |
| 168 | 116.03 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 170 | 116.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 173 | 116.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 177 | 116.03 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 186 | 116.03 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 187 | 116.03 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 188 | 116.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 197 | 116.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 211 | 116.34 | wind | 1.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 252 | 117.50 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 280 | 117.77 | wind | 3.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 295 | 118.05 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 17 |
| 296 | 118.07 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 310 | 118.22 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 313 | 118.28 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 337 | 118.83 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 15 |
| 341 | 118.86 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 343 | 118.87 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 350 | 119.03 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 377 | 119.38 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 381 | 119.41 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 382 | 119.43 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 409 | 119.85 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 1 |
| 410 | 119.85 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 412 | 119.87 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 415 | 119.91 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 418 | 119.92 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 420 | 119.92 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 421 | 119.92 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 424 | 119.92 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 425 | 119.92 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 427 | 119.92 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 431 | 119.92 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 434 | 119.96 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 451 | 120.16 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 456 | 120.21 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 467 | 120.36 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 468 | 120.37 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 511 | 120.93 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 515 | 120.98 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 516 | 120.98 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 521 | 121.06 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 535 | 121.20 | wind | 7.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 537 | 121.20 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 538 | 121.20 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 539 | 121.20 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 542 | 121.20 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 543 | 121.20 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 548 | 121.20 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 550 | 121.20 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 557 | 121.25 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 591 | 121.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 602 | 121.72 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 608 | 121.76 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 647 | 122.12 | wind | 1.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 650 | 122.16 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 656 | 122.17 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 659 | 122.19 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 20 |
| 678 | 122.34 | radiation | 1.0 | 10 | > th | dose independent | sin | 10 | NA |
| 704 | 122.37 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 709 | 122.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 23 |
| 710 | 122.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 713 | 122.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 23 |
| 715 | 122.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 733 | 122.47 | wind | 1.0 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 734 | 122.48 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 742 | 122.53 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 746 | 122.54 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 747 | 122.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 1 |
| 748 | 122.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 749 | 122.55 | radiation | 1.0 | 10 | < th | dose independent | sin | 10 | NA |
| 751 | 122.56 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 754 | 122.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 755 | 122.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 756 | 122.57 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 759 | 122.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 760 | 122.57 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 765 | 122.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 23 |
| 766 | 122.57 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 774 | 122.59 | wind | 1.0 | 90 | < th | dose dependent | rect. | 21 | 11 |
| 778 | 122.62 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 780 | 122.62 | wind | 1.0 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 788 | 122.66 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 23 | 6 |
| 789 | 122.66 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 790 | 122.67 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 792 | 122.70 | radiation | 1.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 795 | 122.73 | wind | 1.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 822 | 122.88 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 830 | 122.92 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 915 | 123.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 21 |
| 916 | 123.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 946 | 123.23 | wind | 1.0 | 90 | < th | dose dependent | rect. | 21 | 19 |
| 958 | 123.26 | wind | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 964 | 123.26 | wind | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 968 | 123.27 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 983 | 123.30 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 986 | 123.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 997 | 123.36 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 5 |