Os03g0121300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 1.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0121300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Peroxidase 1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.88 | 0.435 | 2.76 | -0.556 | 0.0534 | 16.6 | -0.514 | -123 | 0.0343 | 4.91 | 30.31 | 270 | 7.98 | 1 |
| 125.48 | 0.522 | 2.68 | -0.195 | 0.32 | 9.02 | 0.411 | -- | 0.115 | 1.09 | 29.6 | 220 | 7.97 | 0.434 |
| 86.48 | 0.433 | 2.75 | -0.547 | 0.0638 | 16.5 | -- | -122 | 0.0384 | 7.18 | 30.32 | 272 | 8 | 0.983 |
| 87.87 | 0.437 | 2.64 | 0.0148 | 0.0273 | 4.07 | -- | -- | 0.124 | 10.8 | 29.7 | 261 | 7.97 | 0.1 |
| 86.69 | 0.434 | 2.76 | -0.548 | -- | 16.5 | -- | -122 | 0.0384 | -- | 30.31 | 271 | 8 | 0.987 |
| 119.37 | 0.512 | 2.7 | 0.0177 | 0.0452 | -- | -0.529 | -- | 0.0145 | 4.77 | -- | -- | -- | -- |
| 119.51 | 0.512 | 2.7 | 0.0217 | 0.108 | -- | -- | -- | 0.0176 | 9.03 | -- | -- | -- | -- |
| 86.72 | 0.434 | 2.7 | -0.00215 | -- | 4.1 | -- | -- | 0.0389 | -- | 29.5 | 231 | 8.15 | 0.105 |
| 86.52 | 0.433 | 2.7 | -- | 0.063 | 4.07 | -- | -- | 0.0395 | 7.93 | 30.46 | 326 | 8.57 | 0.0789 |
| 120.19 | 0.512 | 2.7 | 0.0216 | -- | -- | -- | -- | 0.0183 | -- | -- | -- | -- | -- |
| 119.53 | 0.511 | 2.7 | -- | 0.108 | -- | -- | -- | 0.0152 | 9.01 | -- | -- | -- | -- |
| 86.72 | 0.434 | 2.7 | -- | -- | 4.1 | -- | -- | 0.0389 | -- | 30.42 | 322 | 8.56 | 0.0635 |
| 120.2 | 0.512 | 2.7 | -- | -- | -- | -- | -- | 0.0159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.63 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 88.46 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 57 | 101.63 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 63 | 102.19 | atmosphere | 995 | 10 | < th | dose dependent | sin | 6 | NA |
| 64 | 102.20 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 65 | 102.20 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 18 | 22 |
| 68 | 102.22 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 69 | 102.22 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 195 | 102.22 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 196 | 102.22 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 378 | 103.89 | temperature | 30 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 570 | 106.97 | atmosphere | 995 | 10 | < th | dose dependent | no | NA | NA |
| 783 | 107.17 | temperature | 30 | 10 | > th | dose dependent | sin | 12 | NA |
| 814 | 107.91 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 1 |
| 832 | 108.03 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 938 | 109.81 | temperature | 30 | 270 | > th | dose independent | sin | 8 | NA |
| 939 | 109.85 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 9 |
| 943 | 109.94 | temperature | 30 | 30 | > th | dose independent | rect. | 16 | 1 |
| 972 | 110.16 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 12 |
| 980 | 110.21 | temperature | 30 | 90 | > th | dose dependent | sin | 8 | NA |