Os03g0121200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 1.
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Os03g0121200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.92 | 0.669 | 7.39 | -1.84 | 2.84 | 1.45 | 1.01 | -1.19 | -0.444 | 5.88 | 62.34 | 1085 | -- | -- |
| 202.85 | 0.663 | 7.39 | -1.77 | 2.84 | 1.14 | 1.01 | -- | -0.494 | 5.93 | 70.72 | 1152 | -- | -- |
| 204.61 | 0.666 | 7.41 | -1.84 | 2.85 | 1.2 | -- | -0.771 | -0.533 | 5.91 | 72.48 | 1166 | -- | -- |
| 205.22 | 0.667 | 7.4 | -1.77 | 2.83 | 1.12 | -- | -- | -0.538 | 5.92 | 73.7 | 1188 | -- | -- |
| 581.84 | 1.13 | 7.47 | -1.48 | -- | -1.64 | -- | -0.982 | -0.584 | -- | 90 | 1293 | -- | -- |
| 230.15 | 0.711 | 7.42 | -1.57 | 2.87 | -- | 1.02 | -- | -0.625 | 5.66 | -- | -- | -- | -- |
| 232.7 | 0.714 | 7.42 | -1.56 | 2.88 | -- | -- | -- | -0.629 | 5.65 | -- | -- | -- | -- |
| 569.75 | 1.12 | 7.46 | -1.5 | -- | -1.87 | -- | -- | -0.549 | -- | 95.85 | 1988 | -- | -- |
| 280.61 | 0.78 | 7.4 | -- | 2.82 | 0.997 | -- | -- | -0.497 | 5.9 | 94 | 1257 | -- | -- |
| 662.84 | 1.2 | 7.46 | -1.47 | -- | -- | -- | -- | -0.56 | -- | -- | -- | -- | -- |
| 297.23 | 0.806 | 7.38 | -- | 2.85 | -- | -- | -- | -0.455 | 5.68 | -- | -- | -- | -- |
| 511.88 | 1.05 | 7.42 | -- | -- | -2.79 | -- | -- | -0.358 | -- | 147.8 | 372 | -- | -- |
| 720.05 | 1.25 | 7.43 | -- | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.85 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 2 | 196.86 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 3 | 198.01 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 15 | 198.76 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 30 | 199.32 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 33 | 199.63 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 34 | 199.65 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 80 | 199.99 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 102 | 200.30 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 103 | 200.31 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 105 | 200.33 | humidity | 60 | 1440 | < th | dose dependent | sin | 13 | NA |
| 157 | 200.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 171 | 200.68 | humidity | 60 | 1440 | < th | dose independent | sin | 12 | NA |
| 175 | 200.73 | humidity | 60 | 1440 | > th | dose independent | sin | 12 | NA |
| 176 | 200.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 179 | 200.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 187 | 200.80 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 440 | 202.58 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 496 | 202.78 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 498 | 202.79 | humidity | 50 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 503 | 202.80 | humidity | 50 | 1440 | > th | dose independent | rect. | 19 | 22 |
| 514 | 202.85 | humidity | 50 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 546 | 202.89 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 799 | 203.89 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 843 | 204.04 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 852 | 204.06 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 917 | 204.18 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 930 | 204.24 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 947 | 204.29 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 990 | 204.37 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 14 |