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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0119700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.026) R2 : 0.25
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.799 (0.0665) R2dC : 0.237 R2C : 0.237
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.14 (0.0548) R2dN8 : 0.0139 R2N8 : 0.0132
σ : 0.491
deviance : 110.18
__
_____
C
peak time of C : 16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.34 0.447 4.79 0.852 0.802 -0.505 0.281 1.2 0.0828 16.3 20.2 723 -- --
94.22 0.452 4.81 0.656 0.768 -0.622 0.277 -- 0.0757 16.2 21.32 1230 -- --
90.5 0.443 4.78 0.861 0.808 -0.498 -- 1.22 0.0888 16.4 20.3 707 -- --
94.41 0.453 4.81 0.666 0.773 -0.627 -- -- 0.08 16.1 21.34 1285 -- --
122.21 0.515 4.76 0.973 -- -0.598 -- 1.25 0.149 -- 21.3 1170 -- --
105.63 0.482 4.84 0.409 0.805 -- 0.178 -- -0.0951 16 -- -- -- --
105.72 0.482 4.84 0.411 0.806 -- -- -- -0.0941 16 -- -- -- --
123.95 0.519 4.8 1.05 -- -1.16 -- -- 0.166 -- 18.4 2609 -- --
103.79 0.474 4.83 -- 0.773 -0.372 -- -- -0.0241 16.3 22.34 984 -- --
141.22 0.555 4.84 0.378 -- -- -- -- -0.116 -- -- -- -- --
110.18 0.491 4.85 -- 0.799 -- -- -- -0.14 16 -- -- -- --
135.29 0.542 4.82 -- -- -0.46 -- -- -0.0156 -- 22.38 1137 -- --
144.99 0.562 4.85 -- -- -- -- -- -0.158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.24 temperature 20 30 > th dose independent rect. 3 23
2 87.91 temperature 10 30 > th dose dependent rect. 3 23
3 88.31 temperature 20 720 > th dose independent rect. 17 20
7 88.56 humidity 90 14400 > th dose dependent rect. 5 2
14 88.84 humidity 90 14400 > th dose dependent rect. 24 17
16 88.86 humidity 90 14400 > th dose dependent rect. 3 12
33 88.98 humidity 90 14400 > th dose dependent sin 4 NA
50 89.16 humidity 90 14400 > th dose independent rect. 23 16
83 89.38 humidity 80 14400 > th dose dependent rect. 19 12
84 89.39 humidity 90 14400 < th dose independent rect. 23 16
86 89.41 humidity 80 14400 > th dose dependent rect. 22 11
102 89.45 temperature 10 270 > th dose dependent rect. 24 22
106 89.46 humidity 80 14400 > th dose dependent sin 9 NA
125 89.51 humidity 90 14400 > th dose dependent rect. 10 21
167 89.62 temperature 20 1440 > th dose independent rect. 17 14
168 89.62 temperature 20 1440 < th dose independent rect. 17 14
177 89.64 temperature 20 1440 > th dose independent rect. 18 10
186 89.66 humidity 90 14400 < th dose independent rect. 22 3
195 89.67 temperature 20 1440 > th dose independent sin 11 NA
201 89.68 humidity 90 14400 > th dose dependent no NA NA
208 89.69 temperature 20 1440 < th dose independent sin 11 NA
220 89.71 temperature 20 1440 < th dose independent rect. 18 10
241 89.74 humidity 90 14400 > th dose independent sin 6 NA
252 89.75 radiation 30 4320 < th dose independent rect. 16 16
281 89.79 temperature 20 1440 < th dose independent rect. 22 13
285 89.80 humidity 90 14400 < th dose independent sin 7 NA
298 89.81 humidity 90 14400 > th dose dependent rect. 3 23
312 89.83 temperature 20 1440 > th dose independent rect. 22 13
313 89.83 temperature 20 1440 < th dose independent rect. 22 15
320 89.83 humidity 90 14400 > th dose dependent rect. 5 23
321 89.84 humidity 90 14400 < th dose independent rect. 5 2
326 89.84 humidity 80 14400 > th dose dependent rect. 19 9
339 89.86 temperature 20 1440 > th dose independent rect. 22 15
366 89.90 humidity 90 14400 > th dose independent rect. 5 2
401 89.93 temperature 20 30 > th dose independent rect. 3 19
419 89.95 humidity 90 14400 > th dose independent rect. 11 20
499 90.03 temperature 15 720 > th dose dependent rect. 17 20
535 90.07 temperature 20 1440 < th dose independent rect. 22 3
536 90.07 temperature 20 4320 > th dose independent rect. 18 5
545 90.08 temperature 20 1440 > th dose independent rect. 21 6
553 90.09 temperature 20 1440 > th dose independent rect. 22 3
581 90.11 temperature 10 30 > th dose dependent rect. 3 19
591 90.12 temperature 25 1440 < th dose dependent rect. 18 10
595 90.13 radiation 30 4320 < th dose independent rect. 23 9
604 90.13 humidity 90 14400 < th dose independent rect. 12 19
638 90.16 radiation 30 4320 < th dose independent rect. 4 4
658 90.17 radiation 30 4320 < th dose independent rect. 7 1
690 90.19 radiation 30 4320 < th dose independent rect. 20 12
698 90.19 temperature 25 1440 < th dose dependent rect. 22 1
709 90.20 temperature 25 1440 < th dose dependent rect. 19 7
758 90.24 temperature 20 720 < th dose independent rect. 18 22
784 90.26 humidity 90 14400 > th dose dependent rect. 23 2
798 90.27 temperature 25 1440 < th dose dependent rect. 21 4
869 90.32 temperature 20 720 > th dose independent rect. 23 22
877 90.33 humidity 90 14400 > th dose independent rect. 22 3
909 90.34 radiation 20 4320 > th dose dependent rect. 6 2
981 90.38 temperature 25 1440 < th dose dependent rect. 3 1