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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0119300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteinase inhibitor, propeptide domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.41 (0.068) R2 : 0.732
β1 : -3.86 (0.248) R2dD : 0.148 R2D : 0.0715
β2 : 7.42 (0.27) R2dC : 1.12 R2C : -0.0271
β3 : -7.84 (0.452) R2dE : 0.443 R2E : -0.644
β4 : 3.55 (0.724) R2dD*C : 0.00843 R2D*C : -0.0172
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.3 (0.144) R2dN8 : 0.21 R2N8 : 0.103
σ : 1.26
deviance : 736.04
__
_____
C
peak time of C : 8.25
E
wheather : humidity
threshold : 37.41
memory length : 909
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.8
open length of G : 17.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
722.11 1.26 7.44 -3.79 7.69 -8.25 4.7 -4.32 -2.4 8.1 35.78 912 12.9 17.2
736.04 1.26 7.41 -3.86 7.42 -7.84 3.55 -- -2.3 8.25 37.41 909 12.8 17.4
758.32 1.28 7.43 -3.76 7.51 -7.83 -- 0.172 -2.35 8.15 35.64 895 12.7 17.6
757.35 1.28 7.45 -3.79 7.44 -8 -- -- -2.4 8.12 36.24 907 12.6 17.4
1222.14 1.63 7.77 -3.62 -- -5.24 -- 0.344 -2.83 -- -23.19 3121 12 17.6
1065.58 1.53 7.55 -3.86 4.02 -- 1.85 -- -2.41 9.84 -- -- -- --
1078.69 1.54 7.55 -3.78 4.01 -- -- -- -2.4 9.87 -- -- -- --
1218.25 1.63 7.77 -3.4 -- -5.24 -- -- -2.83 -- -23.19 3121 12 17.6
1119.77 1.56 7.27 -- 7.76 -8.21 -- -- -1.94 8.88 54.35 902 14.1 16.7
2040.1 2.11 7.66 -3.83 -- -- -- -- -2.4 -- -- -- -- --
1455.86 1.78 7.46 -- 4.02 -- -- -- -1.98 9.94 -- -- -- --
1255.28 1.65 7.59 -- -- -6.11 -- -- -2.24 -- -98.94 3154 11.9 15
2426.3 2.3 7.56 -- -- -- -- -- -1.98 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 771.28 humidity 70 1440 < th dose independent rect. 11 2
2 780.18 humidity 60 720 > th dose dependent rect. 15 17
4 780.96 humidity 70 1440 < th dose independent rect. 11 20
5 781.19 humidity 70 1440 < th dose independent rect. 11 9
19 783.48 humidity 80 720 > th dose dependent rect. 4 20
34 785.16 humidity 70 1440 < th dose independent rect. 11 6
37 785.62 humidity 60 1440 > th dose dependent rect. 18 22
41 785.93 humidity 70 1440 > th dose independent rect. 11 2
43 786.23 humidity 60 1440 > th dose dependent rect. 10 22
44 786.36 humidity 90 720 < th dose dependent rect. 17 15
56 787.83 humidity 70 1440 < th dose independent sin 21 NA
62 788.15 humidity 60 1440 > th dose dependent rect. 22 22
69 788.62 humidity 70 1440 < th dose independent rect. 18 23
72 788.93 humidity 60 1440 > th dose dependent rect. 22 19
83 789.62 humidity 50 720 > th dose dependent rect. 18 7
101 790.09 humidity 60 1440 > th dose dependent rect. 3 23
104 790.31 humidity 60 1440 > th dose dependent rect. 5 23
108 790.44 humidity 60 1440 > th dose dependent no NA NA
113 790.65 humidity 70 1440 > th dose independent rect. 11 22
118 791.00 humidity 70 1440 > th dose independent rect. 11 9
125 791.09 humidity 70 1440 > th dose independent rect. 11 11
129 791.15 humidity 70 1440 > th dose independent rect. 11 18
133 791.21 humidity 70 1440 > th dose independent rect. 11 16
169 791.81 humidity 60 720 > th dose dependent sin 14 NA
208 792.99 humidity 70 1440 < th dose independent no NA NA
209 792.99 humidity 70 1440 < th dose independent rect. 6 14
266 793.04 humidity 60 1440 > th dose dependent rect. 13 23
287 793.25 humidity 70 1440 > th dose independent rect. 18 22
310 793.58 humidity 70 1440 > th dose independent sin 22 NA
339 794.51 humidity 90 720 < th dose dependent sin 12 NA
402 795.84 humidity 70 1440 < th dose independent rect. 15 23
411 795.92 humidity 70 1440 > th dose independent rect. 2 18
416 795.97 humidity 70 1440 > th dose independent rect. 4 16
423 796.01 humidity 70 1440 > th dose independent rect. 6 14
457 796.12 humidity 70 1440 > th dose independent rect. 6 23
458 796.13 humidity 70 1440 > th dose independent no NA NA
460 796.13 humidity 70 1440 > th dose independent rect. 4 23
467 796.17 humidity 70 1440 > th dose independent rect. 6 21
515 796.59 humidity 90 1440 < th dose dependent rect. 19 22
547 797.28 humidity 90 1440 < th dose dependent rect. 11 22
565 797.79 humidity 70 1440 > th dose independent rect. 15 23
581 797.90 wind 1 43200 < th dose independent rect. 1 5
630 798.76 radiation 40 1440 > th dose independent rect. 14 1
632 798.82 humidity 70 720 > th dose dependent rect. 19 2
636 799.01 humidity 90 720 < th dose dependent rect. 17 11
649 799.32 humidity 60 1440 > th dose dependent sin 1 NA
652 799.36 radiation 40 1440 < th dose independent rect. 14 6
684 799.89 humidity 90 1440 < th dose dependent rect. 13 20
692 799.99 radiation 40 1440 < th dose independent rect. 14 19
712 800.34 radiation 40 1440 < th dose independent rect. 14 8
749 801.18 humidity 90 1440 < th dose dependent rect. 22 23
750 801.19 wind 1 43200 > th dose independent rect. 24 5
768 801.51 humidity 90 1440 < th dose dependent rect. 15 23
771 801.56 humidity 60 720 > th dose dependent rect. 18 5
774 801.59 humidity 90 1440 < th dose dependent no NA NA
781 801.67 radiation 40 1440 < th dose independent rect. 14 1
803 802.03 humidity 90 1440 < th dose dependent rect. 2 23
810 802.13 radiation 40 1440 < th dose independent rect. 14 15
814 802.21 radiation 40 1440 > th dose independent rect. 14 19
843 802.41 humidity 90 1440 < th dose dependent rect. 5 23
869 802.87 radiation 40 1440 < th dose independent rect. 14 13
944 803.86 wind 3 43200 < th dose dependent rect. 2 4